Co-expression analysis

Gene ID	Contig8260_s_at
Gene name
Homology with Arabidopsis	Similar to At1g65230: unknown protein (HF=2e+0)
Module size	6 genes
NF	0.76
%ile	95.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.1	0.97	Contig8260_s_at	Contig8260	-	-	2e+0	At1g65230	unknown protein	O.I.	H.G.	S.X.	Please select
0.80	92.5	0.98	HA20A06r_at	HA20A06r	-	-	2e-1	At1g61820	BGLU46 (BETA GLUCOSIDASE 46)	O.I.	H.G.	S.X.	Please select
0.77	90.8	0.95	Contig12750_at	Contig12750	-	-	5e-1	At5g28630	glycine-rich protein	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.96	Contig3122_at	Contig3122	-	-	1e+0	At5g66815	unknown protein	O.I.	H.G.	S.X.	Please select
0.61	78.7	0.96	Contig14594_at	Contig14594	-	-	5e-17	At5g54080	HGO (HOMOGENTISATE 1,2-DIOXYGENASE)	O.I.	H.G.	S.X.	Please select
0.56	74.3	0.94	EBpi07_SQ002_E06_at	EBpi07_SQ002_E06	-	-	2e+0	At1g44835	YbaK/prolyl-tRNA synthetase family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.5	97.6	GSM398262	HS41-1_0d_rep2	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
4.5	96.7	GSM261047	after 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
4.3	96.4	GSM215732	gibberellin plus Yariv-reagent treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
3.9	95.8	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.9	95.8	GSM261037	Dicktoo-subzero-rep2	GSE10329	Low temperature stress in cv. Dicktoo
3.8	95.7	GSM261072	Albina f-17 Hardened rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.8	95.7	GSM440974	Stressed awn_Rep3	GSE17669	Gene expression in the barley spike during drought stress
3.8	95.7	GSM261046	after 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.8	95.7	GSM363465	5 mM B(OH)3 treatment (5B) - rep3	GSE14521	Late response to boron toxicity in barley leaves
3.7	95.5	GSM261021	ABA-Control-rep1	GSE10328	ABA experiment

Inter-species module comparison

A co-expression module including the wheat gene, Ta.14695.1.S1_at, orthologous to the query gene, Contig8260_s_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.55	76.8	Ta.14695.1.S1_at	At1g65230	-	-	1e+0	At1g44414	unknown protein	O.I.	H.G.	S.X.	Please select
0.80	92.2	Ta.568.1.S1_at	At1g65230	-	-	1e-24	At2g13360	AGT (ALANINE:GLYOXYLATE AMINOTRANSFERASE)	O.I.	H.G.	S.X.	Please select
0.71	88.0	Ta.28775.1.S1_x_at	At1g65230	-	-	5e-39	At1g68010	HPR	O.I.	H.G.	S.X.	Please select
0.67	86.3	Ta.9308.2.S1_a_at	At1g65230	-	-	2e+0	At3g61070	PEX11E	O.I.	H.G.	S.X.	Please select
0.67	86.3	Ta.442.1.S1_at	At1g65230	catalase	-	1e-27	At4g35090	CAT2 (CATALASE 2)	O.I.	H.G.	S.X.	Please select
0.67	86.3	Ta.28197.1.S1_at	At1g65230	-	-	2e-60	At3g14420	(S)-2-hydroxy-acid oxidase, peroxisomal, putative / glycolate oxidase, putative / short chain alpha-hydroxy acid oxidase, putative	O.I.	H.G.	S.X.	Please select
0.64	83.6	Ta.9308.1.S1_at	At1g65230	-	-	4e-5	At1g01820	PEX11C (PEROXIN 11C)	O.I.	H.G.	S.X.	Please select
0.57	79.2	Ta.9308.2.S1_x_at	At1g65230	-	-	2e+0	At3g61070	PEX11E	O.I.	H.G.	S.X.	Please select
0.42	60.9	Ta.5590.1.S1_x_at	At1g65230	-	-	1e+0	At1g37140	MCT1 (mei2 C-Terminal RRM only like 1)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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