Co-expression analysis

Gene ID	Contig8241_at
Gene name
Homology with Arabidopsis	Similar to At4g19390: - (HF=1e+0)
Module size	13 genes
NF	0.66
%ile	87.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.65	81.4	0.96	Contig8241_at	Contig8241	-	-	1e+0	At4g19390	-	O.I.	H.G.	S.X.	Please select
0.77	90.8	0.97	HS07P13u_s_at	HS07P13u	-	-	5e-5	At3g16780	60S ribosomal protein L19 (RPL19B)	O.I.	H.G.	S.X.	Please select
0.76	89.8	0.97	Contig10700_at	Contig10700	-	-	2e+0	At4g15990	unknown protein	O.I.	H.G.	S.X.	Please select
0.73	88.7	0.98	HVSMEb0010L13r2_at	HVSMEb0010L13r2	-	-	1e+0	At5g19970	unknown protein	O.I.	H.G.	S.X.	Please select
0.71	87.1	0.98	Contig3541_s_at	Contig3541	-	-	2e-5	At2g36390	SBE2.1 (starch branching enzyme 2.1)	O.I.	H.G.	S.X.	Please select
0.69	85.5	0.97	EBed02_SQ003_C14_s_at	EBed02_SQ003_C14	-	-	3e+0	At1g72230	plastocyanin-like domain-containing protein	O.I.	H.G.	S.X.	Please select
0.64	80.9	0.97	Contig19629_at	Contig19629	-	-	1e-26	At1g80900	magnesium transporter CorA-like family protein (MGT1) (MRS2)	O.I.	H.G.	S.X.	Please select
0.63	80.3	0.98	HI05M04r_s_at	HI05M04r	-	-	1e-23	At2g33370	60S ribosomal protein L23 (RPL23B)	O.I.	H.G.	S.X.	Please select
0.61	78.7	0.98	HU14M19u_s_at	HU14M19u	-	-	3e+0	At1g74060	60S ribosomal protein L6 (RPL6B)	O.I.	H.G.	S.X.	Please select
0.57	74.9	0.98	Contig10380_x_at	Contig10380	-	-	4e-1	At1g17880	nascent polypeptide-associated complex (NAC) domain-containing protein / BTF3b-like transcription factor, putative	O.I.	H.G.	S.X.	Please select
0.57	74.9	0.98	HA03D07u_s_at	HA03D07u	-	-	1e-1	At5g15530	BCCP2 (BIOTIN CARBOXYL CARRIER PROTEIN 2)	O.I.	H.G.	S.X.	Please select
0.46	61.0	0.97	Contig2975_s_at	Contig2975	-	-	2e+0	At2g30860	ATGSTF9 (GLUTATHIONE S-TRANSFERASE PHI 9)	O.I.	H.G.	S.X.	Please select
0.45	59.3	0.98	HA12A08u_s_at	HA12A08u	-	-	5e-2	At1g22780	PFL (POINTED FIRST LEAVES)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.3	97.4	GSM398263	HS41-1_0d_rep3	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
4.2	96.3	GSM398253	Martin_1d_rep2	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
3.7	95.5	GSM398261	HS41-1_0d_rep1	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
3.5	95.1	GSM282033	Malting_day4_Harrington_rep4	GSE11200	Expression data from malting barley seeds
3.4	94.8	GSM161220	cold treatment rep2	GSE6993	Barley low temperature stress
3.3	94.6	GSM398262	HS41-1_0d_rep2	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
3.3	94.6	GSM71146	OWB-D unstress replicate 2	GSE3170	Barley single feature polymorphisms and drought stress gene expression
3.0	93.8	GSM261021	ABA-Control-rep1	GSE10328	ABA experiment
2.9	93.4	GSM161221	cold treatment rep3	GSE6993	Barley low temperature stress
2.9	93.4	GSM261022	ABA-Control-rep2	GSE10328	ABA experiment

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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