Co-expression analysis

Gene ID Contig8230_at
Gene name
Homology with ArabidopsisSimilar to At4g04860: DER2.2 (DERLIN-2.2) (HF=3e-24)
Module size 6 genes
NF 0.30
%ile 39.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5674.30.95Contig8230_atContig8230--3e-24At4g04860DER2.2 (DERLIN-2.2)O.I.H.G.S.X.
0.4053.10.96Contig15661_atContig15661--5e-17At4g17530ATRAB1CO.I.H.G.S.X.
0.4053.10.96Contig14241_atContig14241--2e+0At3g16250NDF4 (NDH-DEPENDENT CYCLIC ELECTRON FLOW 1)O.I.H.G.S.X.
0.2630.40.96Contig10115_atContig10115--7e-1At5g48220indole-3-glycerol phosphate synthase, putativeO.I.H.G.S.X.
0.2021.10.95Contig25401_atContig25401--4e-3At1g78710unknown proteinO.I.H.G.S.X.
0.1818.20.95Contig10800_atContig10800--2e-53At1g69960PP2A (SERINE/THREONINE PROTEIN PHOSPHATASE 2A)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
6.097.9GSM238413Endosperm 4DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
5.797.7GSM238412Endosperm 4DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.696.8GSM261038Dicktoo-subzero-rep3GSE10329Low temperature stress in cv. DicktooLink to GEO
4.396.4GSM261079Albina e-16 Hardened rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
4.396.4GSM261036Dicktoo-subzero-rep1GSE10329Low temperature stress in cv. DicktooLink to GEO
3.895.7GSM261070Albina f-17 Control rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
3.895.7GSM238410Pericarp 8DAF; seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.695.3GSM372956genotype: Mla6 - pathogen isolates: K1 - time: 0 - rep1GSE14930Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance geneLink to GEO
3.595.1GSM261073Albina f-17 Hardened rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
3.595.1GSM398250Martin_0d_rep2GSE15970Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley GenotypesLink to GEO

Inter-species module comparison

A co-expression module including the maize gene, Zm.3755.2.S1_at, orthologous to the query gene, Contig8230_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.9699.8Zm.3755.2.S1_atAt4g04860derlin2-1-2e-13At4g21810DER2.1 (DERLIN-2.1)O.I.H.G.S.X.
0.5469.8Zm.3996.1.S1_atAt4g04860hypothetical protein LOC100274383-2e-11At2g39770CYT1 (CYTOKINESIS DEFECTIVE 1)O.I.H.G.S.X.
0.4759.9Zm.791.1.S1_s_atAt4g04860hypothetical protein LOC100280140-3e+0At4g1672060S ribosomal protein L15 (RPL15A)O.I.H.G.S.X.
0.4658.4ZmAffx.467.1.S1_atAt4g04860Calmodulin-like-1e-2At3g43810CAM7 (CALMODULIN 7)O.I.H.G.S.X.
0.4556.4Zm.18526.1.S1_atAt4g04860hypothetical protein LOC100272796-6e-17At5g13100unknown proteinO.I.H.G.S.X.
0.4455.7Zm.17849.1.A1_atAt4g04860Hypothetical protein LOC100192672-1e-71At1g10950endomembrane protein 70, putativeO.I.H.G.S.X.
0.4149.7Zm.2150.1.A1_a_atAt4g04860Hypothetical protein LOC100193916-4e-33At5g20920EIF2 BETAO.I.H.G.S.X.
0.3945.6Zm.439.1.A1_atAt4g04860RNA polymerase sigma factor 1-3e+0At1g64860SIGA (SIGMA FACTOR A)O.I.H.G.S.X.
0.3844.2Zm.6532.4.S1_a_atAt4g04860dehydrin 13-9e-2At1g20440COR47 (COLD-REGULATED 47)O.I.H.G.S.X.
0.3844.2ZmAffx.1160.1.A1_atAt4g04860--1e+1At1g24060unknown proteinO.I.H.G.S.X.
0.3742.3Zm.1940.1.S1_atAt4g04860--5e-1At4g13615four F5 protein-related / 4F5 protein-relatedO.I.H.G.S.X.
0.3538.9Zm.17662.2.S1_x_atAt4g04860--1e+1Atcg00660-O.I.H.G.S.X.
0.3538.9Zm.13679.1.A1_atAt4g04860chemocyanin-9e-5At1g72230plastocyanin-like domain-containing proteinO.I.H.G.S.X.
0.3538.9Zm.16462.1.S1_atAt4g04860Xaa-His dipeptidase; X-His dipeptidase; beta-alanyl-histidine dipeptidase-7e+0At5g57685AtGDU3 (Arabidopsis thaliana GLUTAMINE DUMPER 3)O.I.H.G.S.X.
0.3437.2Zm.10393.1.S1_atAt4g04860--2e+0At5g11425unknown proteinO.I.H.G.S.X.
0.3437.2Zm.14476.2.A1_atAt4g04860Protein disulfide isomerase-1e-5At3g54960ATPDIL1-3 (PDI-LIKE 1-3)O.I.H.G.S.X.
0.3336.0Zm.11992.1.A1_atAt4g04860--3e+0At5g41614unknown proteinO.I.H.G.S.X.
0.3336.0Zm.11761.1.A1_atAt4g04860--1e+1At4g10170synaptobrevin-related family proteinO.I.H.G.S.X.
0.3233.4Zm.9643.1.A1_atAt4g04860--3e+0At2g07721unknown proteinO.I.H.G.S.X.
0.3233.4Zm.18885.1.A1_atAt4g04860hypothetical protein LOC100276818-3e+0At5g28780unknown proteinO.I.H.G.S.X.
0.3131.6Zm.19357.1.A1_atAt4g04860pre-mRNA cleavage complex II protein Clp1-2e+0At2g38465unknown proteinO.I.H.G.S.X.
0.3131.6Zm.5133.1.S1_atAt4g04860hypothetical protein LOC100273486-2e-1At1g01710acyl-CoA thioesterase family proteinO.I.H.G.S.X.
0.2928.1Zm.2668.1.A1_atAt4g04860hypothetical protein LOC100193351-4e+0At1g01050AtPPa1 (Arabidopsis thaliana pyrophosphorylase 1)O.I.H.G.S.X.
0.2928.1Zm.17172.1.A1_atAt4g04860--2e+0At1g55675unknown proteinO.I.H.G.S.X.
0.2724.6Zm.9267.1.A1_atAt4g04860hypothetical protein AY107012 /// UPF0497 membrane protein 7-2e+0At2g36210auxin-responsive family proteinO.I.H.G.S.X.
0.2521.3ZmAffx.936.1.S1_atAt4g04860--3e+0At3g10490anac052 (Arabidopsis NAC domain containing protein 52)O.I.H.G.S.X.
0.1912.8ZmAffx.531.1.A1_atAt4g04860--8e-1At5g20370serine-rich protein-relatedO.I.H.G.S.X.
0.1912.8ZmAffx.601.1.A1_atAt4g04860--8e-1At1g35430unknown proteinO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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