CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Contig8230_at

Gene name
Homology with Arabidopsis Similar to At4g04860: DER2.2 (DERLIN-2.2) (HF=3e-24)

Module size 6 genes

NF 0.30

%ile 39.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.56 74.3 0.95 Contig8230_at Contig8230 - - 3e-24 At4g04860 DER2.2 (DERLIN-2.2) O.I. H.G. S.X.
0.40 53.1 0.96 Contig15661_at Contig15661 - - 5e-17 At4g17530 ATRAB1C O.I. H.G. S.X.
0.40 53.1 0.96 Contig14241_at Contig14241 - - 2e+0 At3g16250 NDF4 (NDH-DEPENDENT CYCLIC ELECTRON FLOW 1) O.I. H.G. S.X.
0.26 30.4 0.96 Contig10115_at Contig10115 - - 7e-1 At5g48220 indole-3-glycerol phosphate synthase, putative O.I. H.G. S.X.
0.20 21.1 0.95 Contig25401_at Contig25401 - - 4e-3 At1g78710 unknown protein O.I. H.G. S.X.
0.18 18.2 0.95 Contig10800_at Contig10800 - - 2e-53 At1g69960 PP2A (SERINE/THREONINE PROTEIN PHOSPHATASE 2A) O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
6.0 97.9 GSM238413 Endosperm 4DAF; Seed development; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
5.7 97.7 GSM238412 Endosperm 4DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
4.6 96.8 GSM261038 Dicktoo-subzero-rep3 GSE10329 Low temperature stress in cv. Dicktoo
4.3 96.4 GSM261079 Albina e-16 Hardened rep3 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.3 96.4 GSM261036 Dicktoo-subzero-rep1 GSE10329 Low temperature stress in cv. Dicktoo
3.8 95.7 GSM261070 Albina f-17 Control rep3 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.8 95.7 GSM238410 Pericarp 8DAF; seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
3.6 95.3 GSM372956 genotype: Mla6 - pathogen isolates: K1 - time: 0 - rep1 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.5 95.1 GSM261073 Albina f-17 Hardened rep3 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.5 95.1 GSM398250 Martin_0d_rep2 GSE15970 Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes

Inter-species module comparison

A co-expression module including the rice gene, Os03g0852200, orthologous to the query gene, Contig8230_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.60 79.7 Os03g0852200 At4g04860 - Der1-like domain containing protein 4e-30 At4g21810 DER2.1 (DERLIN-2.1) O.I. H.G. S.X.
0.57 77.0 Os04g0464500 At4g04860 - UBX domain containing protein 7e-4 At4g22150 PUX3 O.I. H.G. S.X.
0.57 77.0 Os03g0784900 At4g04860 - Conserved hypothetical protein 1e-1 At2g34690 ACD11 (ACCELERATED CELL DEATH 11) O.I. H.G. S.X.
0.56 76.3 Os10g0397200 At4g04860 - Winged helix DNA-binding domain containing protein 4e-1 Atcg01070 - O.I. H.G. S.X.
0.56 76.3 Os01g0857700 At4g04860 - Cell cycle control protein cwf14 2e-19 At4g21110 G10 family protein O.I. H.G. S.X.
0.38 46.9 Os06g0264300 At4g04860 - UV excision repair protein Rad23 family protein 1e-12 At3g02540 RAD23-3 (PUTATIVE DNA REPAIR PROTEIN RAD23-3) O.I. H.G. S.X.
0.33 38.8 Os11g0433200 At4g04860 - Peptidase A22B, minor histocompatibility antigenH13 family protein 5e-3 At1g01650 aspartic-type endopeptidase/ peptidase O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage