Co-expression analysis

Gene ID Contig8230_at
Gene name
Homology with ArabidopsisSimilar to At4g04860: DER2.2 (DERLIN-2.2) (HF=3e-24)
Module size 6 genes
NF 0.30
%ile 39.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5674.30.95Contig8230_atContig8230--3e-24At4g04860DER2.2 (DERLIN-2.2)O.I.H.G.S.X.
0.4053.10.96Contig15661_atContig15661--5e-17At4g17530ATRAB1CO.I.H.G.S.X.
0.4053.10.96Contig14241_atContig14241--2e+0At3g16250NDF4 (NDH-DEPENDENT CYCLIC ELECTRON FLOW 1)O.I.H.G.S.X.
0.2630.40.96Contig10115_atContig10115--7e-1At5g48220indole-3-glycerol phosphate synthase, putativeO.I.H.G.S.X.
0.2021.10.95Contig25401_atContig25401--4e-3At1g78710unknown proteinO.I.H.G.S.X.
0.1818.20.95Contig10800_atContig10800--2e-53At1g69960PP2A (SERINE/THREONINE PROTEIN PHOSPHATASE 2A)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
6.097.9GSM238413Endosperm 4DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
5.797.7GSM238412Endosperm 4DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.696.8GSM261038Dicktoo-subzero-rep3GSE10329Low temperature stress in cv. DicktooLink to GEO
4.396.4GSM261079Albina e-16 Hardened rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
4.396.4GSM261036Dicktoo-subzero-rep1GSE10329Low temperature stress in cv. DicktooLink to GEO
3.895.7GSM261070Albina f-17 Control rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
3.895.7GSM238410Pericarp 8DAF; seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.695.3GSM372956genotype: Mla6 - pathogen isolates: K1 - time: 0 - rep1GSE14930Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance geneLink to GEO
3.595.1GSM261073Albina f-17 Hardened rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
3.595.1GSM398250Martin_0d_rep2GSE15970Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley GenotypesLink to GEO

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At4g04860, orthologous to the query gene, Contig8230_at

VF%ileGene IDRepr. IDGene NameFunc.O.I.H.G.S.X.Other DB
0.6781.6At4g04860825823DER2.2 (DERLIN-2.2)F:unknown;P:proteolysis;C:cellular_component unknown;MOFPO.I.H.G.S.X.
0.7184.2At1g11020837644zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:unknown;C:unknown;MOPFVO.I.H.G.S.X.
0.6075.7At1g71190843459SAG18 (SENESCENCE ASSOCIATED GENE 18)Senescence associated gene (SAG). Expression induced by ozone. Encodes a plant-specific protein of unknown function. Based on a personal communication from David Meinke (08/21/2007), this gene is not allelic to TTN4, even though this has been stated previously in a publication.O.I.H.G.S.X.
0.5773.8At4g32680829403unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.H.G.S.X.
0.5673.0At5g02040831904PRA1.A1 (PRENYLATED RAB ACCEPTOR 1.A1)F:molecular_function unknown;P:vesicle-mediated transport;C:endoplasmic reticulum;MPFO.I.H.G.S.X.
0.5065.3At4g26240828730unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PFO.I.H.G.S.X.
0.3846.7At1g68070843135zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:unknown;C:plasma membrane;PMOFVBO.I.H.G.S.X.
0.3032.1At1g54115841851CCX4 (CATION CALCIUM EXCHANGER 4)Involved in cation (Na and K) homeostasis.O.I.H.G.S.X.
0.2830.3At4g05000825842VPS28-2F:transporter activity;P:transport;C:ESCRT I complex;MFPOO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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