Co-expression analysis

Gene ID	Contig8209_at
Gene name
Homology with Arabidopsis	Similar to At1g76760: ATY1 (ARABIDOPSIS THIOREDOXIN Y1) (HF=1e+0)
Module size	25 genes
NF	0.26
%ile	33.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.83	94.0	0.94	Contig8209_at	Contig8209	-	-	1e+0	At1g76760	ATY1 (ARABIDOPSIS THIOREDOXIN Y1)	O.I.	H.G.	S.X.	Please select
0.49	63.7	0.95	Contig13114_at	Contig13114	-	-	1e+0	At1g14450	unknown protein	O.I.	H.G.	S.X.	Please select
0.44	58.9	0.95	Contig9715_s_at	Contig9715	-	-	8e+0	At4g35350	XCP1 (XYLEM CYSTEINE PEPTIDASE 1)	O.I.	H.G.	S.X.	Please select
0.37	47.9	0.94	Contig6569_at	Contig6569	-	-	1e-56	At5g36880	acetyl-CoA synthetase, putative / acetate-CoA ligase, putative	O.I.	H.G.	S.X.	Please select
0.36	47.1	0.95	Contig9518_at	Contig9518	-	-	5e+0	At5g46160	ribosomal protein L14 family protein / huellenlos paralog (HLP)	O.I.	H.G.	S.X.	Please select
0.32	40.3	0.96	Contig3848_at	Contig3848	-	-	7e-23	At4g34350	HDR (4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE REDUCTASE)	O.I.	H.G.	S.X.	Please select
0.28	35.5	0.96	Contig19804_at	Contig19804	-	-	2e+0	At3g54040	photoassimilate-responsive protein-related	O.I.	H.G.	S.X.	Please select
0.28	35.5	0.94	Contig7831_at	Contig7831	-	-	6e-23	At4g17190	FPS2 (FARNESYL DIPHOSPHATE SYNTHASE 2)	O.I.	H.G.	S.X.	Please select
0.27	32.1	0.95	Contig7155_at	Contig7155	-	-	3e-1	At1g65520	ECI1 (DELTA(3), DELTA(2)-ENOYL COA ISOMERASE 1)	O.I.	H.G.	S.X.	Please select
0.25	28.9	0.95	rbags22i06_at	rbags22i06	-	-	1e-3	At2g23140	binding / ubiquitin-protein ligase	O.I.	H.G.	S.X.	Please select
0.24	27.2	0.94	Contig6329_at	Contig6329	-	-	3e-31	At2g40490	HEME2	O.I.	H.G.	S.X.	Please select
0.24	27.2	0.95	Contig19064_at	Contig19064	-	-	3e+0	At4g09460	ATMYB6	O.I.	H.G.	S.X.	Please select
0.23	26.1	0.96	Contig1454_at	Contig1454	-	-	4e-52	At3g25520	ATL5 (A. THALIANA RIBOSOMAL PROTEIN L5)	O.I.	H.G.	S.X.	Please select
0.23	26.1	0.95	Contig5285_at	Contig5285	-	-	1e+0	At2g36210	auxin-responsive family protein	O.I.	H.G.	S.X.	Please select
0.23	26.1	0.94	Contig21229_at	Contig21229	-	-	6e+0	At5g15360	unknown protein	O.I.	H.G.	S.X.	Please select
0.22	24.2	0.94	Contig10522_at	Contig10522	-	-	5e+0	At5g03270	unknown protein	O.I.	H.G.	S.X.	Please select
0.22	24.2	0.94	Contig8166_at	Contig8166	-	-	4e-11	At5g49940	NFU2 (NIFU-LIKE PROTEIN 2)	O.I.	H.G.	S.X.	Please select
0.21	22.6	0.96	Contig4901_s_at	Contig4901	-	-	5e+0	At5g01380	transcription factor	O.I.	H.G.	S.X.	Please select
0.21	22.6	0.95	Contig11034_at	Contig11034	-	-	9e-12	At3g53180	catalytic/ glutamate-ammonia ligase	O.I.	H.G.	S.X.	Please select
0.21	22.6	0.96	Contig10800_at	Contig10800	-	-	2e-53	At1g69960	PP2A (SERINE/THREONINE PROTEIN PHOSPHATASE 2A)	O.I.	H.G.	S.X.	Please select
0.20	21.1	0.96	Contig12530_at	Contig12530	-	-	7e-1	At1g51070	basic helix-loop-helix (bHLH) family protein	O.I.	H.G.	S.X.	Please select
0.20	21.1	0.96	Contig5295_at	Contig5295	-	-	2e-113	At2g27210	kelch repeat-containing serine/threonine phosphoesterase family protein	O.I.	H.G.	S.X.	Please select
0.14	12.9	0.95	Contig7067_at	Contig7067	-	-	2e-14	At3g04240	SEC (secret agent)	O.I.	H.G.	S.X.	Please select
0.13	11.6	0.96	Contig14345_at	Contig14345	-	-	2e-8	At2g20840	secretory carrier membrane protein (SCAMP) family protein	O.I.	H.G.	S.X.	Please select
0.13	11.6	0.96	Contig6337_at	Contig6337	-	-	2e+0	At3g10640	VPS60.1	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.8	95.7	GSM238418	Endosperm 25DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.5	95.1	GSM238409	Pericarp 4DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.4	94.8	GSM238417	Endosperm 16DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.4	94.8	GSM238411	Pericarp 8DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.3	94.6	GSM238419	Endosperm 25DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.1	94.1	GSM238410	Pericarp 8DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.0	93.8	GSM440968	Stressed palea_Rep3	GSE17669	Gene expression in the barley spike during drought stress
2.9	93.4	GSM238416	Endosperm 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
2.7	92.7	GSM261046	after 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
2.6	92.3	GSM238435	Embryo 24 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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