Co-expression analysis

Gene ID	Contig819_at
Gene name
Homology with Arabidopsis	Similar to At5g37770: TCH2 (TOUCH 2) (HF=3e+0)
Module size	35 genes
NF	0.22
%ile	27.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.92	98.4	0.91	Contig819_at	Contig819	-	-	3e+0	At5g37770	TCH2 (TOUCH 2)	O.I.	H.G.	S.X.	Please select
0.39	50.5	0.95	Contig23092_at	Contig23092	-	-	5e+0	At5g33210	SRS8 (SHI-RELATED SEQUENCE 8)	O.I.	H.G.	S.X.	Please select
0.32	40.3	0.94	Contig24914_at	Contig24914	-	-	1e+0	At5g09650	AtPPa6 (Arabidopsis thaliana pyrophosphorylase 6)	O.I.	H.G.	S.X.	Please select
0.31	38.6	0.94	Contig10621_at	Contig10621	-	-	4e-1	At1g14315	-	O.I.	H.G.	S.X.	Please select
0.30	37.0	0.91	Contig8378_at	Contig8378	-	-	2e+0	At2g28370	-	O.I.	H.G.	S.X.	Please select
0.30	37.0	0.94	Contig15701_at	Contig15701	-	-	1e-1	At3g58490	phosphatidic acid phosphatase family protein / PAP2 family protein	O.I.	H.G.	S.X.	Please select
0.29	35.5	0.95	Contig10218_at	Contig10218	-	-	2e+0	At2g44820	unknown protein	O.I.	H.G.	S.X.	Please select
0.28	35.5	0.95	HVSMEg0010L05r2_at	HVSMEg0010L05r2	-	-	2e+0	At2g45610	hydrolase	O.I.	H.G.	S.X.	Please select
0.27	32.1	0.94	Contig23368_at	Contig23368	-	-	1e+0	At4g14780	protein kinase, putative	O.I.	H.G.	S.X.	Please select
0.27	32.1	0.92	Contig11159_at	Contig11159	-	-	8e-1	At4g24980	-	O.I.	H.G.	S.X.	Please select
0.26	30.4	0.95	Contig6546_at	Contig6546	-	-	8e+0	At5g02780	In2-1 protein, putative	O.I.	H.G.	S.X.	Please select
0.26	30.4	0.95	Contig17788_at	Contig17788	-	-	1e+1	At4g11760	LCR17 (Low-molecular-weight cysteine-rich 17)	O.I.	H.G.	S.X.	Please select
0.25	28.9	0.96	Contig7686_at	Contig7686	-	-	2e-1	At1g60650	glycine-rich RNA-binding protein, putative	O.I.	H.G.	S.X.	Please select
0.24	27.2	0.95	Contig4758_at	Contig4758	-	-	2e-4	At5g35330	MBD02 (METHYL-CPG-BINDING DOMAIN PROTEIN 02)	O.I.	H.G.	S.X.	Please select
0.22	24.2	0.94	Contig16121_at	Contig16121	-	-	1e-1	At5g35580	ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase	O.I.	H.G.	S.X.	Please select
0.22	24.2	0.95	Contig23996_at	Contig23996	-	-	6e-9	At4g39970	haloacid dehalogenase-like hydrolase family protein	O.I.	H.G.	S.X.	Please select
0.22	24.2	0.94	HW04E04u_at	HW04E04u	-	-	1e+0	At4g14272	-	O.I.	H.G.	S.X.	Please select
0.21	22.6	0.95	Contig6884_s_at	Contig6884	-	-	9e-5	At4g34100	protein binding / zinc ion binding	O.I.	H.G.	S.X.	Please select
0.21	22.6	0.92	Contig22848_at	Contig22848	-	-	3e-1	At3g59640	glycine-rich protein	O.I.	H.G.	S.X.	Please select
0.21	22.6	0.95	Contig20481_at	Contig20481	-	-	4e+0	At5g42825	unknown protein	O.I.	H.G.	S.X.	Please select
0.20	21.1	0.95	Contig15553_at	Contig15553	-	-	5e+0	At2g42930	glycosyl hydrolase family protein 17	O.I.	H.G.	S.X.	Please select
0.20	21.1	0.95	Contig10099_at	Contig10099	-	-	9e-19	At1g06220	MEE5 (MATERNAL EFFECT EMBRYO ARREST 5)	O.I.	H.G.	S.X.	Please select
0.19	19.6	0.95	Contig14258_at	Contig14258	-	-	5e+0	At1g30800	-	O.I.	H.G.	S.X.	Please select
0.19	19.6	0.95	Contig12918_at	Contig12918	-	-	3e+1	At5g02280	synbindin, putative	O.I.	H.G.	S.X.	Please select
0.19	19.6	0.94	Contig11352_at	Contig11352	-	-	3e-5	At3g56120	Met-10+ like family protein	O.I.	H.G.	S.X.	Please select
0.18	18.2	0.95	Contig642_at	Contig642	-	-	4e-5	At4g08930	ATAPRL6 (APR-like 6)	O.I.	H.G.	S.X.	Please select
0.18	18.2	0.94	Contig8431_at	Contig8431	-	-	5e-1	At2g42350	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.16	15.3	0.95	Contig7219_x_at	Contig7219	-	-	5e-1	At1g56360	PAP6 (PURPLE ACID PHOSPHATASE 6)	O.I.	H.G.	S.X.	Please select
0.16	15.3	0.94	Contig10507_at	Contig10507	-	-	2e+1	At5g10990	auxin-responsive family protein	O.I.	H.G.	S.X.	Please select
0.15	14.1	0.94	Contig11854_at	Contig11854	-	-	5e-11	At1g50360	VIIIA	O.I.	H.G.	S.X.	Please select
0.14	12.9	0.94	Contig12469_at	Contig12469	-	-	5e+0	At5g21125	unknown protein	O.I.	H.G.	S.X.	Please select
0.14	12.9	0.95	HC111D12_T3_s_at	HC111D12_T3	-	-	8e-1	At5g63700	zinc finger (C3HC4 type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.11	9.4	0.94	Contig9013_at	Contig9013	-	-	4e-20	At1g80230	cytochrome c oxidase family protein	O.I.	H.G.	S.X.	Please select
0.10	8.4	0.93	Contig15199_at	Contig15199	-	-	4e+0	At2g40150	-	O.I.	H.G.	S.X.	Please select
0.10	8.4	0.95	Contig7360_at	Contig7360	-	-	3e+0	At4g19620	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.8	97.0	GSM146358	Golden Promise Root Control, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
4.6	96.8	GSM146364	Maythorpe Root Control, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
3.3	94.6	GSM146367	Maythorpe Root Salt, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
3.2	94.3	GSM238412	Endosperm 4DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.1	94.1	GSM146361	Golden Promise Root Salt, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
3.0	93.8	GSM146359	Golden Promise Root Control, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
2.9	93.4	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
2.8	93.1	GSM215732	gibberellin plus Yariv-reagent treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
2.6	92.3	GSM238436	Embryo 48 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
2.5	91.9	GSM382234	Root_Hg3	GSE15295	Mercury toxicity in barley roots

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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