CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Contig8141_at

Gene name
Homology with Arabidopsis Similar to At5g07950: unknown protein (HF=2e+0)

Module size 6 genes

NF 0.44

%ile 61.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.40 53.1 0.96 Contig8141_at Contig8141 - - 2e+0 At5g07950 unknown protein O.I. H.G. S.X.
0.50 66.9 0.97 Contig9632_at Contig9632 - - 1e-1 At1g78370 ATGSTU20 (GLUTATHIONE S-TRANSFERASE TAU 20) O.I. H.G. S.X.
0.50 66.9 0.97 Contig12594_at Contig12594 - - 3e+0 At5g11990 proline-rich family protein O.I. H.G. S.X.
0.43 56.4 0.96 Contig6890_at Contig6890 - - 4e+0 At5g34581 hydroxyproline-rich glycoprotein family protein O.I. H.G. S.X.
0.36 47.1 0.97 rbags1e22_s_at rbags1e22 - - 3e-1 At3g56360 unknown protein O.I. H.G. S.X.
0.35 45.1 0.96 Contig10647_at Contig10647 - - 2e-46 At2g20930 - O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.40	53.1	0.96	Contig8141_at	Contig8141	-	-	2e+0	At5g07950	unknown protein	O.I.	H.G.	S.X.
0.50	66.9	0.97	Contig9632_at	Contig9632	-	-	1e-1	At1g78370	ATGSTU20 (GLUTATHIONE S-TRANSFERASE TAU 20)	O.I.	H.G.	S.X.
0.50	66.9	0.97	Contig12594_at	Contig12594	-	-	3e+0	At5g11990	proline-rich family protein	O.I.	H.G.	S.X.
0.43	56.4	0.96	Contig6890_at	Contig6890	-	-	4e+0	At5g34581	hydroxyproline-rich glycoprotein family protein	O.I.	H.G.	S.X.
0.36	47.1	0.97	rbags1e22_s_at	rbags1e22	-	-	3e-1	At3g56360	unknown protein	O.I.	H.G.	S.X.
0.35	45.1	0.96	Contig10647_at	Contig10647	-	-	2e-46	At2g20930	-	O.I.	H.G.	S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.8 97.0 GSM282038 Malting_kilned_Morex_rep1 GSE11200 Expression data from malting barley seeds
4.1 96.2 GSM282033 Malting_day4_Harrington_rep4 GSE11200 Expression data from malting barley seeds
3.5 95.1 GSM282031 Malting_day1_Harrington_rep1 GSE11200 Expression data from malting barley seeds
2.9 93.4 GSM282040 Malting_kilned_Morex_rep2 GSE11200 Expression data from malting barley seeds
2.7 92.7 GSM382235 Root_Control1 GSE15295 Mercury toxicity in barley roots
2.5 91.9 GSM382236 Root_Control2 GSE15295 Mercury toxicity in barley roots
2.2 90.3 GSM238435 Embryo 24 h; Seed germination; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
2.2 90.3 GSM382237 Root_Control3 GSE15295 Mercury toxicity in barley roots
2.2 90.3 GSM261079 Albina e-16 Hardened rep3 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
2.1 89.7 GSM398263 HS41-1_0d_rep3 GSE15970 Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
4.8	97.0	GSM282038	Malting_kilned_Morex_rep1	GSE11200	Expression data from malting barley seeds
4.1	96.2	GSM282033	Malting_day4_Harrington_rep4	GSE11200	Expression data from malting barley seeds
3.5	95.1	GSM282031	Malting_day1_Harrington_rep1	GSE11200	Expression data from malting barley seeds
2.9	93.4	GSM282040	Malting_kilned_Morex_rep2	GSE11200	Expression data from malting barley seeds
2.7	92.7	GSM382235	Root_Control1	GSE15295	Mercury toxicity in barley roots
2.5	91.9	GSM382236	Root_Control2	GSE15295	Mercury toxicity in barley roots
2.2	90.3	GSM238435	Embryo 24 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
2.2	90.3	GSM382237	Root_Control3	GSE15295	Mercury toxicity in barley roots
2.2	90.3	GSM261079	Albina e-16 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
2.1	89.7	GSM398263	HS41-1_0d_rep3	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes

Inter-species module comparison

A co-expression module including the maize gene, Zm.275.3.A1_at, orthologous to the query gene, Contig8141_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.97 99.9 Zm.275.3.A1_at At5g07950 Ethylene receptor homologue - 7e-2 At1g05085 unknown protein O.I. H.G. S.X.
0.39 45.6 Zm.6402.2.A1_at At5g07950 Dwarf plant9 - 1e-2 At5g17490 RGL3 (RGA-LIKE PROTEIN 3) O.I. H.G. S.X.
0.39 45.6 Zm.5011.1.A1_at At5g07950 sterol methyltransferase1 - 2e-32 At5g13710 SMT1 (STEROL METHYLTRANSFERASE 1) O.I. H.G. S.X.
0.39 45.6 Zm.13545.1.A1_at At5g07950 - - 6e+0 At4g29150 IQD25 (IQ-domain 25) O.I. H.G. S.X.
0.39 45.6 Zm.16.1.A1_at At5g07950 opaque2 heterodimerizing protein1 - 8e-1 At4g02640 BZO2H1 O.I. H.G. S.X.
0.38 44.2 Zm.17248.2.S1_at At5g07950 - - 3e-10 At5g37510 EMB1467 (embryo defective 1467) O.I. H.G. S.X.
0.37 42.3 Zm.13139.1.A1_at At5g07950 EREBP-4 like protein - 2e-1 At1g47740 unknown protein O.I. H.G. S.X.
0.36 41.3 Zm.11621.2.A1_x_at At5g07950 diphthamide biosynthesis protein 3 - 2e-2 At2g15910 CSL zinc finger domain-containing protein O.I. H.G. S.X.
0.36 41.3 Zm.16449.1.S1_at At5g07950 - - 1e+0 At3g29034 unknown protein O.I. H.G. S.X.
0.35 38.9 Zm.538.1.S1_at At5g07950 calcium exchanger1 - 1e-6 At3g51860 CAX3 (CATION EXCHANGER 3) O.I. H.G. S.X.
0.35 38.9 Zm.10135.1.A1_at At5g07950 - - 1e+0 At5g47550 cysteine protease inhibitor, putative / cystatin, putative O.I. H.G. S.X.
0.35 38.9 Zm.6079.1.S1_x_at At5g07950 ribosomal protein L25 - 1e-53 At2g39460 RPL23AA (RIBOSOMAL PROTEIN L23AA) O.I. H.G. S.X.
0.34 37.2 Zm.15789.1.A1_at At5g07950 hypothetical protein LOC100276378 - 7e-7 At2g38710 AMMECR1 family O.I. H.G. S.X.
0.33 36.0 Zm.16409.1.A1_at At5g07950 - - 2e-2 At4g22540 ORP2A (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 2A) O.I. H.G. S.X.
0.33 36.0 Zm.2750.1.S1_at At5g07950 hypothetical protein LOC100274502 - 7e-20 At3g15610 transducin family protein / WD-40 repeat family protein O.I. H.G. S.X.
0.33 36.0 Zm.18791.1.A1_at At5g07950 - - 2e-23 At4g30900 - O.I. H.G. S.X.
0.32 33.4 Zm.19236.1.A1_at At5g07950 hypothetical protein LOC100276491 - 2e+0 At5g02210 - O.I. H.G. S.X.
0.32 33.4 Zm.18110.1.S1_s_at At5g07950 arginine/serine-rich splicing factor 2 variant 2 /// arginine/serine-rich splicing factor 2 variant 3 - 3e-8 At3g61860 RSP31 O.I. H.G. S.X.
0.31 31.6 ZmAffx.720.1.S1_at At5g07950 - - 2e-1 At1g11572 - O.I. H.G. S.X.
0.31 31.6 Zm.130.1.S1_at At5g07950 root cap-specific glycine-rich protein - 4e-1 At1g61750 - O.I. H.G. S.X.
0.31 31.6 Zm.2997.1.S1_at At5g07950 REX1 DNA Repair family protein - 6e+0 At5g35525 unknown protein O.I. H.G. S.X.
0.30 29.8 Zm.5101.1.S1_at At5g07950 hypothetical protein LOC100193724 - 1e-3 At3g01300 protein kinase, putative O.I. H.G. S.X.
0.29 28.1 Zm.18281.1.S1_at At5g07950 hypothetical protein LOC100277869 - 5e-1 At1g56530 hydroxyproline-rich glycoprotein family protein O.I. H.G. S.X.
0.29 28.1 Zm.1272.1.S1_at At5g07950 hypothetical protein LOC100279896 - 3e-15 At3g12080 emb2738 (embryo defective 2738) O.I. H.G. S.X.
0.27 24.6 Zm.12381.2.S1_x_at At5g07950 - - 2e-1 At1g11270 F-box family protein O.I. H.G. S.X.
0.27 24.6 Zm.18405.1.A1_at At5g07950 hypothetical protein LOC100193248 - 3e+0 At5g01881 unknown protein O.I. H.G. S.X.
0.26 22.7 Zm.10538.1.A1_at At5g07950 - - 6e-7 At3g59830 ankyrin protein kinase, putative O.I. H.G. S.X.
0.26 22.7 Zm.1817.2.A1_at At5g07950 - - 3e-1 At2g28625 unknown protein O.I. H.G. S.X.
0.26 22.7 ZmAffx.539.1.S1_at At5g07950 - - 3e+0 At5g14320 30S ribosomal protein S13, chloroplast (CS13) O.I. H.G. S.X.
0.26 22.7 Zm.6414.1.A1_at At5g07950 - - 5e-5 At3g53500 zinc knuckle (CCHC-type) family protein O.I. H.G. S.X.
0.25 21.3 Zm.3559.1.S1_at At5g07950 global transcription factor group E - 2e-2 At5g14270 ATBET9 (Arabidopsis thaliana Bromodomain and Extraterminal Domain protein 9) O.I. H.G. S.X.
0.23 18.6 Zm.12595.1.S1_at At5g07950 - - 1e-7 At1g09620 ATP binding / aminoacyl-tRNA ligase/ leucine-tRNA ligase/ nucleotide binding O.I. H.G. S.X.
0.22 16.9 Zm.2358.1.A1_at At5g07950 chlorophyllide a oxygenase - 2e+0 At4g16240 unknown protein O.I. H.G. S.X.
0.22 16.9 Zm.8901.1.A1_at At5g07950 hypothetical protein LOC100192580 - 9e-3 At3g11400 eukaryotic translation initiation factor 3G / eIF3g O.I. H.G. S.X.
0.22 16.9 ZmAffx.1206.1.S1_s_at At5g07950 - - 2e+0 At2g33370 60S ribosomal protein L23 (RPL23B) O.I. H.G. S.X.
0.22 16.9 Zm.15975.1.A1_at At5g07950 - - 5e-2 At4g17560 ribosomal protein L19 family protein O.I. H.G. S.X.
0.22 16.9 Zm.13861.1.A1_at At5g07950 methionine adenosyltransferase - 2e-113 At2g36880 MAT3 (methionine adenosyltransferase 3) O.I. H.G. S.X.
0.20 14.2 Zm.10287.1.S1_at At5g07950 - - 1e+0 At2g45250 unknown protein O.I. H.G. S.X.
0.16 9.4 Zm.14033.1.S1_at At5g07950 hypothetical protein LOC100277680 - 5e-1 At2g18460 LCV3 (like cov 3) O.I. H.G. S.X.

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.97	99.9	Zm.275.3.A1_at	At5g07950	Ethylene receptor homologue	-	7e-2	At1g05085	unknown protein	O.I.	H.G.	S.X.
0.39	45.6	Zm.6402.2.A1_at	At5g07950	Dwarf plant9	-	1e-2	At5g17490	RGL3 (RGA-LIKE PROTEIN 3)	O.I.	H.G.	S.X.
0.39	45.6	Zm.5011.1.A1_at	At5g07950	sterol methyltransferase1	-	2e-32	At5g13710	SMT1 (STEROL METHYLTRANSFERASE 1)	O.I.	H.G.	S.X.
0.39	45.6	Zm.13545.1.A1_at	At5g07950	-	-	6e+0	At4g29150	IQD25 (IQ-domain 25)	O.I.	H.G.	S.X.
0.39	45.6	Zm.16.1.A1_at	At5g07950	opaque2 heterodimerizing protein1	-	8e-1	At4g02640	BZO2H1	O.I.	H.G.	S.X.
0.38	44.2	Zm.17248.2.S1_at	At5g07950	-	-	3e-10	At5g37510	EMB1467 (embryo defective 1467)	O.I.	H.G.	S.X.
0.37	42.3	Zm.13139.1.A1_at	At5g07950	EREBP-4 like protein	-	2e-1	At1g47740	unknown protein	O.I.	H.G.	S.X.
0.36	41.3	Zm.11621.2.A1_x_at	At5g07950	diphthamide biosynthesis protein 3	-	2e-2	At2g15910	CSL zinc finger domain-containing protein	O.I.	H.G.	S.X.
0.36	41.3	Zm.16449.1.S1_at	At5g07950	-	-	1e+0	At3g29034	unknown protein	O.I.	H.G.	S.X.
0.35	38.9	Zm.538.1.S1_at	At5g07950	calcium exchanger1	-	1e-6	At3g51860	CAX3 (CATION EXCHANGER 3)	O.I.	H.G.	S.X.
0.35	38.9	Zm.10135.1.A1_at	At5g07950	-	-	1e+0	At5g47550	cysteine protease inhibitor, putative / cystatin, putative	O.I.	H.G.	S.X.
0.35	38.9	Zm.6079.1.S1_x_at	At5g07950	ribosomal protein L25	-	1e-53	At2g39460	RPL23AA (RIBOSOMAL PROTEIN L23AA)	O.I.	H.G.	S.X.
0.34	37.2	Zm.15789.1.A1_at	At5g07950	hypothetical protein LOC100276378	-	7e-7	At2g38710	AMMECR1 family	O.I.	H.G.	S.X.
0.33	36.0	Zm.16409.1.A1_at	At5g07950	-	-	2e-2	At4g22540	ORP2A (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 2A)	O.I.	H.G.	S.X.
0.33	36.0	Zm.2750.1.S1_at	At5g07950	hypothetical protein LOC100274502	-	7e-20	At3g15610	transducin family protein / WD-40 repeat family protein	O.I.	H.G.	S.X.
0.33	36.0	Zm.18791.1.A1_at	At5g07950	-	-	2e-23	At4g30900	-	O.I.	H.G.	S.X.
0.32	33.4	Zm.19236.1.A1_at	At5g07950	hypothetical protein LOC100276491	-	2e+0	At5g02210	-	O.I.	H.G.	S.X.
0.32	33.4	Zm.18110.1.S1_s_at	At5g07950	arginine/serine-rich splicing factor 2 variant 2 /// arginine/serine-rich splicing factor 2 variant 3	-	3e-8	At3g61860	RSP31	O.I.	H.G.	S.X.
0.31	31.6	ZmAffx.720.1.S1_at	At5g07950	-	-	2e-1	At1g11572	-	O.I.	H.G.	S.X.
0.31	31.6	Zm.130.1.S1_at	At5g07950	root cap-specific glycine-rich protein	-	4e-1	At1g61750	-	O.I.	H.G.	S.X.
0.31	31.6	Zm.2997.1.S1_at	At5g07950	REX1 DNA Repair family protein	-	6e+0	At5g35525	unknown protein	O.I.	H.G.	S.X.
0.30	29.8	Zm.5101.1.S1_at	At5g07950	hypothetical protein LOC100193724	-	1e-3	At3g01300	protein kinase, putative	O.I.	H.G.	S.X.
0.29	28.1	Zm.18281.1.S1_at	At5g07950	hypothetical protein LOC100277869	-	5e-1	At1g56530	hydroxyproline-rich glycoprotein family protein	O.I.	H.G.	S.X.
0.29	28.1	Zm.1272.1.S1_at	At5g07950	hypothetical protein LOC100279896	-	3e-15	At3g12080	emb2738 (embryo defective 2738)	O.I.	H.G.	S.X.
0.27	24.6	Zm.12381.2.S1_x_at	At5g07950	-	-	2e-1	At1g11270	F-box family protein	O.I.	H.G.	S.X.
0.27	24.6	Zm.18405.1.A1_at	At5g07950	hypothetical protein LOC100193248	-	3e+0	At5g01881	unknown protein	O.I.	H.G.	S.X.
0.26	22.7	Zm.10538.1.A1_at	At5g07950	-	-	6e-7	At3g59830	ankyrin protein kinase, putative	O.I.	H.G.	S.X.
0.26	22.7	Zm.1817.2.A1_at	At5g07950	-	-	3e-1	At2g28625	unknown protein	O.I.	H.G.	S.X.
0.26	22.7	ZmAffx.539.1.S1_at	At5g07950	-	-	3e+0	At5g14320	30S ribosomal protein S13, chloroplast (CS13)	O.I.	H.G.	S.X.
0.26	22.7	Zm.6414.1.A1_at	At5g07950	-	-	5e-5	At3g53500	zinc knuckle (CCHC-type) family protein	O.I.	H.G.	S.X.
0.25	21.3	Zm.3559.1.S1_at	At5g07950	global transcription factor group E	-	2e-2	At5g14270	ATBET9 (Arabidopsis thaliana Bromodomain and Extraterminal Domain protein 9)	O.I.	H.G.	S.X.
0.23	18.6	Zm.12595.1.S1_at	At5g07950	-	-	1e-7	At1g09620	ATP binding / aminoacyl-tRNA ligase/ leucine-tRNA ligase/ nucleotide binding	O.I.	H.G.	S.X.
0.22	16.9	Zm.2358.1.A1_at	At5g07950	chlorophyllide a oxygenase	-	2e+0	At4g16240	unknown protein	O.I.	H.G.	S.X.
0.22	16.9	Zm.8901.1.A1_at	At5g07950	hypothetical protein LOC100192580	-	9e-3	At3g11400	eukaryotic translation initiation factor 3G / eIF3g	O.I.	H.G.	S.X.
0.22	16.9	ZmAffx.1206.1.S1_s_at	At5g07950	-	-	2e+0	At2g33370	60S ribosomal protein L23 (RPL23B)	O.I.	H.G.	S.X.
0.22	16.9	Zm.15975.1.A1_at	At5g07950	-	-	5e-2	At4g17560	ribosomal protein L19 family protein	O.I.	H.G.	S.X.
0.22	16.9	Zm.13861.1.A1_at	At5g07950	methionine adenosyltransferase	-	2e-113	At2g36880	MAT3 (methionine adenosyltransferase 3)	O.I.	H.G.	S.X.
0.20	14.2	Zm.10287.1.S1_at	At5g07950	-	-	1e+0	At2g45250	unknown protein	O.I.	H.G.	S.X.
0.16	9.4	Zm.14033.1.S1_at	At5g07950	hypothetical protein LOC100277680	-	5e-1	At2g18460	LCV3 (like cov 3)	O.I.	H.G.	S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera

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Gene ID	Contig8141_at
Gene name
Homology with Arabidopsis	Similar to At5g07950: unknown protein (HF=2e+0)
Module size	6 genes
NF	0.44
%ile	61.8

Co-expression analysis

Gene ID Contig8141_at Gene name Homology with ArabidopsisSimilar to At5g07950: unknown protein (HF=2e+0) Module size 6 genes NF 0.44 %ile 61.8

Co-expressed genes

Click More genes

Specific experiments for the module

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaGlycine_maxOryza_sativaPopulus_trichocarpaTriticum_aestivumVitis_vinifera

Gene ID Contig8141_at

Gene name
Homology with Arabidopsis Similar to At5g07950: unknown protein (HF=2e+0)

Module size 6 genes

NF 0.44

%ile 61.8

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera