Co-expression analysis

Gene ID	Contig8141_at
Gene name
Homology with Arabidopsis	Similar to At5g07950: unknown protein (HF=2e+0)
Module size	6 genes
NF	0.44
%ile	61.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.40	53.1	0.96	Contig8141_at	Contig8141	-	-	2e+0	At5g07950	unknown protein	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.97	Contig9632_at	Contig9632	-	-	1e-1	At1g78370	ATGSTU20 (GLUTATHIONE S-TRANSFERASE TAU 20)	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.97	Contig12594_at	Contig12594	-	-	3e+0	At5g11990	proline-rich family protein	O.I.	H.G.	S.X.	Please select
0.43	56.4	0.96	Contig6890_at	Contig6890	-	-	4e+0	At5g34581	hydroxyproline-rich glycoprotein family protein	O.I.	H.G.	S.X.	Please select
0.36	47.1	0.97	rbags1e22_s_at	rbags1e22	-	-	3e-1	At3g56360	unknown protein	O.I.	H.G.	S.X.	Please select
0.35	45.1	0.96	Contig10647_at	Contig10647	-	-	2e-46	At2g20930	-	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.8	97.0	GSM282038	Malting_kilned_Morex_rep1	GSE11200	Expression data from malting barley seeds
4.1	96.2	GSM282033	Malting_day4_Harrington_rep4	GSE11200	Expression data from malting barley seeds
3.5	95.1	GSM282031	Malting_day1_Harrington_rep1	GSE11200	Expression data from malting barley seeds
2.9	93.4	GSM282040	Malting_kilned_Morex_rep2	GSE11200	Expression data from malting barley seeds
2.7	92.7	GSM382235	Root_Control1	GSE15295	Mercury toxicity in barley roots
2.5	91.9	GSM382236	Root_Control2	GSE15295	Mercury toxicity in barley roots
2.2	90.3	GSM238435	Embryo 24 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
2.2	90.3	GSM382237	Root_Control3	GSE15295	Mercury toxicity in barley roots
2.2	90.3	GSM261079	Albina e-16 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
2.1	89.7	GSM398263	HS41-1_0d_rep3	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes

Inter-species module comparison

A co-expression module including the wheat gene, TaAffx.12776.1.A1_at, orthologous to the query gene, Contig8141_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.50	72.4	TaAffx.12776.1.A1_at	At5g07950	-	-	4e+0	At4g36945	phospholipase C/ phosphoric diester hydrolase	O.I.	H.G.	S.X.	Please select
0.67	86.3	Ta.9077.2.A1_x_at	At5g07950	-	-	6e+0	At5g37380	DNAJ heat shock N-terminal domain-containing protein	O.I.	H.G.	S.X.	Please select
0.60	81.0	Ta.9077.1.S1_x_at	At5g07950	-	-	3e-19	At1g77670	aminotransferase class I and II family protein	O.I.	H.G.	S.X.	Please select
0.36	51.9	Ta.10108.2.A1_a_at	At5g07950	-	-	2e-3	At5g43150	unknown protein	O.I.	H.G.	S.X.	Please select
0.27	35.6	Ta.3888.1.S1_a_at	At5g07950	-	-	8e-5	At5g54430	universal stress protein (USP) family protein	O.I.	H.G.	S.X.	Please select
0.19	22.4	Ta.10108.2.A1_x_at	At5g07950	-	-	2e-3	At5g43150	unknown protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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