CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Contig8141_at

Gene name
Homology with Arabidopsis Similar to At5g07950: unknown protein (HF=2e+0)

Module size 6 genes

NF 0.44

%ile 61.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.40 53.1 0.96 Contig8141_at Contig8141 - - 2e+0 At5g07950 unknown protein O.I. H.G. S.X.
0.50 66.9 0.97 Contig9632_at Contig9632 - - 1e-1 At1g78370 ATGSTU20 (GLUTATHIONE S-TRANSFERASE TAU 20) O.I. H.G. S.X.
0.50 66.9 0.97 Contig12594_at Contig12594 - - 3e+0 At5g11990 proline-rich family protein O.I. H.G. S.X.
0.43 56.4 0.96 Contig6890_at Contig6890 - - 4e+0 At5g34581 hydroxyproline-rich glycoprotein family protein O.I. H.G. S.X.
0.36 47.1 0.97 rbags1e22_s_at rbags1e22 - - 3e-1 At3g56360 unknown protein O.I. H.G. S.X.
0.35 45.1 0.96 Contig10647_at Contig10647 - - 2e-46 At2g20930 - O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.40	53.1	0.96	Contig8141_at	Contig8141	-	-	2e+0	At5g07950	unknown protein	O.I.	H.G.	S.X.
0.50	66.9	0.97	Contig9632_at	Contig9632	-	-	1e-1	At1g78370	ATGSTU20 (GLUTATHIONE S-TRANSFERASE TAU 20)	O.I.	H.G.	S.X.
0.50	66.9	0.97	Contig12594_at	Contig12594	-	-	3e+0	At5g11990	proline-rich family protein	O.I.	H.G.	S.X.
0.43	56.4	0.96	Contig6890_at	Contig6890	-	-	4e+0	At5g34581	hydroxyproline-rich glycoprotein family protein	O.I.	H.G.	S.X.
0.36	47.1	0.97	rbags1e22_s_at	rbags1e22	-	-	3e-1	At3g56360	unknown protein	O.I.	H.G.	S.X.
0.35	45.1	0.96	Contig10647_at	Contig10647	-	-	2e-46	At2g20930	-	O.I.	H.G.	S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.8 97.0 GSM282038 Malting_kilned_Morex_rep1 GSE11200 Expression data from malting barley seeds
4.1 96.2 GSM282033 Malting_day4_Harrington_rep4 GSE11200 Expression data from malting barley seeds
3.5 95.1 GSM282031 Malting_day1_Harrington_rep1 GSE11200 Expression data from malting barley seeds
2.9 93.4 GSM282040 Malting_kilned_Morex_rep2 GSE11200 Expression data from malting barley seeds
2.7 92.7 GSM382235 Root_Control1 GSE15295 Mercury toxicity in barley roots
2.5 91.9 GSM382236 Root_Control2 GSE15295 Mercury toxicity in barley roots
2.2 90.3 GSM238435 Embryo 24 h; Seed germination; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
2.2 90.3 GSM382237 Root_Control3 GSE15295 Mercury toxicity in barley roots
2.2 90.3 GSM261079 Albina e-16 Hardened rep3 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
2.1 89.7 GSM398263 HS41-1_0d_rep3 GSE15970 Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
4.8	97.0	GSM282038	Malting_kilned_Morex_rep1	GSE11200	Expression data from malting barley seeds
4.1	96.2	GSM282033	Malting_day4_Harrington_rep4	GSE11200	Expression data from malting barley seeds
3.5	95.1	GSM282031	Malting_day1_Harrington_rep1	GSE11200	Expression data from malting barley seeds
2.9	93.4	GSM282040	Malting_kilned_Morex_rep2	GSE11200	Expression data from malting barley seeds
2.7	92.7	GSM382235	Root_Control1	GSE15295	Mercury toxicity in barley roots
2.5	91.9	GSM382236	Root_Control2	GSE15295	Mercury toxicity in barley roots
2.2	90.3	GSM238435	Embryo 24 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
2.2	90.3	GSM382237	Root_Control3	GSE15295	Mercury toxicity in barley roots
2.2	90.3	GSM261079	Albina e-16 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
2.1	89.7	GSM398263	HS41-1_0d_rep3	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes

Inter-species module comparison

A co-expression module including the rice gene, Os07g0540200, orthologous to the query gene, Contig8141_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.74 91.4 Os07g0540200 At5g07950 - Conserved hypothetical protein 1e+1 At5g60615 - O.I. H.G. S.X.
0.55 73.7 Os03g0120000 At5g07950 - Hypothetical protein 5e+0 At4g17890 AGD8 (ARF-GAP DOMAIN 8) O.I. H.G. S.X.
0.51 68.7 Os08g0101600 At5g07950 - Single-strand DNA endonuclease-1 4e-3 At3g53235 unknown protein O.I. H.G. S.X.
0.50 68.0 Os01g0330100 At5g07950 - - 2e-3 At1g28610 GDSL-motif lipase, putative O.I. H.G. S.X.
0.49 64.4 Os03g0826000 At5g07950 - Conserved hypothetical protein 2e-2 At1g14750 SDS (SOLO DANCERS) O.I. H.G. S.X.
0.45 58.8 Os07g0596000 At5g07950 - Conserved hypothetical protein 7e-30 At1g69420 zinc finger (DHHC type) family protein O.I. H.G. S.X.
0.45 58.8 Os03g0645000 At5g07950 - Beta-expansin 7e-1 At3g20850 proline-rich family protein O.I. H.G. S.X.
0.44 58.1 Os05g0540100 At5g07950 - FEN-1 2e-18 At5g26680 endonuclease, putative O.I. H.G. S.X.
0.42 53.9 Os02g0751100 At5g07950 - Peptidase A1, pepsin family protein 7e-6 At2g17760 aspartyl protease family protein O.I. H.G. S.X.
0.41 52.4 Os01g0617700 At5g07950 - Hypothetical protein 9e-2 At2g04025 unknown protein O.I. H.G. S.X.
0.38 46.9 Os04g0511700 At5g07950 - Conserved hypothetical protein 5e-2 At4g13850 GR-RBP2 (GLYCINE-RICH RNA-BINDING PROTEIN 2) O.I. H.G. S.X.
0.37 45.0 Os05g0511500 At5g07950 - Lipoic acid synthetase, mitochondrial precursor(Lip-syn) (Lipoate synthase) 5e-5 At5g08415 lipoic acid synthase family protein O.I. H.G. S.X.
0.34 40.0 Os09g0510700 At5g07950 - ADP-ribosylation factor GTPase-activating proteinGCS1 1e-44 At5g13300 SFC (SCARFACE) O.I. H.G. S.X.
0.33 38.8 Os09g0272300 At5g07950 - Glycoside hydrolase, family 17 protein 7e-11 At4g17180 glycosyl hydrolase family 17 protein O.I. H.G. S.X.
0.30 32.7 Os04g0678300 At5g07950 - WD40-like domain containing protein 8e-24 At5g54200 WD-40 repeat family protein O.I. H.G. S.X.
0.29 31.1 Os04g0689400 At5g07950 - Protein kinase domain containing protein 2e-9 At1g49730 protein kinase family protein O.I. H.G. S.X.
0.28 31.1 Os01g0605300 At5g07950 - - 4e-3 At3g24515 UBC37 (ubiquitin-conjugating enzyme 37) O.I. H.G. S.X.
0.28 31.1 Os12g0442700 At5g07950 - Hypothetical protein 1e+0 At1g34910 unknown protein O.I. H.G. S.X.
0.28 31.1 Os02g0645100 At5g07950 - Kinesin, motor region domain containing protein 8e-18 At3g51150 kinesin motor family protein O.I. H.G. S.X.
0.27 27.5 Os10g0533000 At5g07950 - D-isomer specific 2-hydroxyacid dehydrogenase,NAD-binding domain containing protein 2e-43 At1g01510 AN (ANGUSTIFOLIA) O.I. H.G. S.X.
0.24 22.4 Os09g0320400 At5g07950 - Xanthine/uracil/vitamin C permease family protein 4e+0 At3g43720 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein O.I. H.G. S.X.
0.23 21.2 Os04g0501200 At5g07950 - Conserved hypothetical protein 6e-5 At5g57970 methyladenine glycosylase family protein O.I. H.G. S.X.
0.19 15.1 Os08g0320300 At5g07950 - Hypothetical protein 1e+0 At5g56460 protein kinase, putative O.I. H.G. S.X.
0.19 15.1 Os01g0509900 At5g07950 - Cyclin-like F-box domain containing protein 1e+0 At5g05580 FAD8 (FATTY ACID DESATURASE 8) O.I. H.G. S.X.
0.19 15.1 Os09g0521900 At5g07950 - Conserved hypothetical protein 1e+0 At1g01880 DNA repair protein, putative O.I. H.G. S.X.
0.18 13.7 Os02g0450000 At5g07950 - Conserved hypothetical protein 1e-1 At2g36710 pectinesterase family protein O.I. H.G. S.X.
0.18 13.7 Os02g0815900 At5g07950 - Protein kinase domain containing protein 3e-8 At2g20300 ALE2 (Abnormal Leaf Shape 2) O.I. H.G. S.X.
0.17 12.6 Os01g0898400 At5g07950 - Hypothetical protein 1e+0 At5g45090 AtPP2-A7 (Phloem protein 2-A7) O.I. H.G. S.X.

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.74	91.4	Os07g0540200	At5g07950	-	Conserved hypothetical protein	1e+1	At5g60615	-	O.I.	H.G.	S.X.
0.55	73.7	Os03g0120000	At5g07950	-	Hypothetical protein	5e+0	At4g17890	AGD8 (ARF-GAP DOMAIN 8)	O.I.	H.G.	S.X.
0.51	68.7	Os08g0101600	At5g07950	-	Single-strand DNA endonuclease-1	4e-3	At3g53235	unknown protein	O.I.	H.G.	S.X.
0.50	68.0	Os01g0330100	At5g07950	-	-	2e-3	At1g28610	GDSL-motif lipase, putative	O.I.	H.G.	S.X.
0.49	64.4	Os03g0826000	At5g07950	-	Conserved hypothetical protein	2e-2	At1g14750	SDS (SOLO DANCERS)	O.I.	H.G.	S.X.
0.45	58.8	Os07g0596000	At5g07950	-	Conserved hypothetical protein	7e-30	At1g69420	zinc finger (DHHC type) family protein	O.I.	H.G.	S.X.
0.45	58.8	Os03g0645000	At5g07950	-	Beta-expansin	7e-1	At3g20850	proline-rich family protein	O.I.	H.G.	S.X.
0.44	58.1	Os05g0540100	At5g07950	-	FEN-1	2e-18	At5g26680	endonuclease, putative	O.I.	H.G.	S.X.
0.42	53.9	Os02g0751100	At5g07950	-	Peptidase A1, pepsin family protein	7e-6	At2g17760	aspartyl protease family protein	O.I.	H.G.	S.X.
0.41	52.4	Os01g0617700	At5g07950	-	Hypothetical protein	9e-2	At2g04025	unknown protein	O.I.	H.G.	S.X.
0.38	46.9	Os04g0511700	At5g07950	-	Conserved hypothetical protein	5e-2	At4g13850	GR-RBP2 (GLYCINE-RICH RNA-BINDING PROTEIN 2)	O.I.	H.G.	S.X.
0.37	45.0	Os05g0511500	At5g07950	-	Lipoic acid synthetase, mitochondrial precursor(Lip-syn) (Lipoate synthase)	5e-5	At5g08415	lipoic acid synthase family protein	O.I.	H.G.	S.X.
0.34	40.0	Os09g0510700	At5g07950	-	ADP-ribosylation factor GTPase-activating proteinGCS1	1e-44	At5g13300	SFC (SCARFACE)	O.I.	H.G.	S.X.
0.33	38.8	Os09g0272300	At5g07950	-	Glycoside hydrolase, family 17 protein	7e-11	At4g17180	glycosyl hydrolase family 17 protein	O.I.	H.G.	S.X.
0.30	32.7	Os04g0678300	At5g07950	-	WD40-like domain containing protein	8e-24	At5g54200	WD-40 repeat family protein	O.I.	H.G.	S.X.
0.29	31.1	Os04g0689400	At5g07950	-	Protein kinase domain containing protein	2e-9	At1g49730	protein kinase family protein	O.I.	H.G.	S.X.
0.28	31.1	Os01g0605300	At5g07950	-	-	4e-3	At3g24515	UBC37 (ubiquitin-conjugating enzyme 37)	O.I.	H.G.	S.X.
0.28	31.1	Os12g0442700	At5g07950	-	Hypothetical protein	1e+0	At1g34910	unknown protein	O.I.	H.G.	S.X.
0.28	31.1	Os02g0645100	At5g07950	-	Kinesin, motor region domain containing protein	8e-18	At3g51150	kinesin motor family protein	O.I.	H.G.	S.X.
0.27	27.5	Os10g0533000	At5g07950	-	D-isomer specific 2-hydroxyacid dehydrogenase,NAD-binding domain containing protein	2e-43	At1g01510	AN (ANGUSTIFOLIA)	O.I.	H.G.	S.X.
0.24	22.4	Os09g0320400	At5g07950	-	Xanthine/uracil/vitamin C permease family protein	4e+0	At3g43720	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	O.I.	H.G.	S.X.
0.23	21.2	Os04g0501200	At5g07950	-	Conserved hypothetical protein	6e-5	At5g57970	methyladenine glycosylase family protein	O.I.	H.G.	S.X.
0.19	15.1	Os08g0320300	At5g07950	-	Hypothetical protein	1e+0	At5g56460	protein kinase, putative	O.I.	H.G.	S.X.
0.19	15.1	Os01g0509900	At5g07950	-	Cyclin-like F-box domain containing protein	1e+0	At5g05580	FAD8 (FATTY ACID DESATURASE 8)	O.I.	H.G.	S.X.
0.19	15.1	Os09g0521900	At5g07950	-	Conserved hypothetical protein	1e+0	At1g01880	DNA repair protein, putative	O.I.	H.G.	S.X.
0.18	13.7	Os02g0450000	At5g07950	-	Conserved hypothetical protein	1e-1	At2g36710	pectinesterase family protein	O.I.	H.G.	S.X.
0.18	13.7	Os02g0815900	At5g07950	-	Protein kinase domain containing protein	3e-8	At2g20300	ALE2 (Abnormal Leaf Shape 2)	O.I.	H.G.	S.X.
0.17	12.6	Os01g0898400	At5g07950	-	Hypothetical protein	1e+0	At5g45090	AtPP2-A7 (Phloem protein 2-A7)	O.I.	H.G.	S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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Gene ID	Contig8141_at
Gene name
Homology with Arabidopsis	Similar to At5g07950: unknown protein (HF=2e+0)
Module size	6 genes
NF	0.44
%ile	61.8

Co-expression analysis

Gene ID Contig8141_at Gene name Homology with ArabidopsisSimilar to At5g07950: unknown protein (HF=2e+0) Module size 6 genes NF 0.44 %ile 61.8

Co-expressed genes

Click More genes

Specific experiments for the module

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaGlycine_maxPopulus_trichocarpaTriticum_aestivumVitis_viniferaZea_mays

Gene ID Contig8141_at

Gene name
Homology with Arabidopsis Similar to At5g07950: unknown protein (HF=2e+0)

Module size 6 genes

NF 0.44

%ile 61.8

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays