CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Contig8141_at

Gene name
Homology with Arabidopsis Similar to At5g07950: unknown protein (HF=2e+0)

Module size 6 genes

NF 0.44

%ile 61.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.40 53.1 0.96 Contig8141_at Contig8141 - - 2e+0 At5g07950 unknown protein O.I. H.G. S.X.
0.50 66.9 0.97 Contig9632_at Contig9632 - - 1e-1 At1g78370 ATGSTU20 (GLUTATHIONE S-TRANSFERASE TAU 20) O.I. H.G. S.X.
0.50 66.9 0.97 Contig12594_at Contig12594 - - 3e+0 At5g11990 proline-rich family protein O.I. H.G. S.X.
0.43 56.4 0.96 Contig6890_at Contig6890 - - 4e+0 At5g34581 hydroxyproline-rich glycoprotein family protein O.I. H.G. S.X.
0.36 47.1 0.97 rbags1e22_s_at rbags1e22 - - 3e-1 At3g56360 unknown protein O.I. H.G. S.X.
0.35 45.1 0.96 Contig10647_at Contig10647 - - 2e-46 At2g20930 - O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.8 97.0 GSM282038 Malting_kilned_Morex_rep1 GSE11200 Expression data from malting barley seeds
4.1 96.2 GSM282033 Malting_day4_Harrington_rep4 GSE11200 Expression data from malting barley seeds
3.5 95.1 GSM282031 Malting_day1_Harrington_rep1 GSE11200 Expression data from malting barley seeds
2.9 93.4 GSM282040 Malting_kilned_Morex_rep2 GSE11200 Expression data from malting barley seeds
2.7 92.7 GSM382235 Root_Control1 GSE15295 Mercury toxicity in barley roots
2.5 91.9 GSM382236 Root_Control2 GSE15295 Mercury toxicity in barley roots
2.2 90.3 GSM238435 Embryo 24 h; Seed germination; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
2.2 90.3 GSM382237 Root_Control3 GSE15295 Mercury toxicity in barley roots
2.2 90.3 GSM261079 Albina e-16 Hardened rep3 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
2.1 89.7 GSM398263 HS41-1_0d_rep3 GSE15970 Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At5g07950, orthologous to the query gene, Contig8141_at

VF %ile Gene ID Repr. ID Gene Name Func. O.I. H.G. S.X. Other DB
1.00 100.0 At5g07950 830689 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PM O.I. H.G. S.X.
0.29 30.3 At1g17520 838326 DNA-binding protein, putative F:transcription factor activity, DNA binding;P:in 6 processes;C:nucleus, nucleosome;PMFO O.I. H.G. S.X.
0.15 7.8 At4g20280 827775 TAF11 (TBP-ASSOCIATED FACTOR 11) Encodes TAF11, a putative TBP-associated factor (TBP: TATA binding protein). O.I. H.G. S.X.
0.10 3.4 At3g14860 820715 NHL repeat-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BOPAM O.I. H.G. S.X.
0.08 2.3 At1g53200 841754 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PB O.I. H.G. S.X.
0.05 1.1 At3g02280 820417 flavodoxin family protein F:electron carrier activity, oxidoreductase activity, FMN binding, iron ion binding;P:biological_process unknown;C:cellular_component unknown;BMOFPA O.I. H.G. S.X.
0.05 1.1 At3g07740 819965 ADA2A (HOMOLOG OF YEAST ADA2 2A) encodes a transcriptional adaptor ADA2a that interacts with histone acetyltransferase GCN5 homolog and CBF1 O.I. H.G. S.X.
0.05 1.1 At2g26060 817147 emb1345 (embryo defective 1345) F:nucleotide binding;P:embryonic development ending in seed dormancy;C:heterotrimeric G-protein complex;MFOBPA O.I. H.G. S.X.
0.04 0.9 At5g47080 834754 CKB1 Regulatory subunit beta of casein kinase II. purified CKB1 resulted in up 100-fold stimulation of casein kinase activity compared with the CKA1 activity alone. Forms a tetrameric complex with CKA1 (CKA1(2)CKB1(2)). O.I. H.G. S.X.
0.04 0.9 At2g36240 818196 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMFBAV O.I. H.G. S.X.
0.04 0.9 At3g12990 820485 RRP45a (Ribonuclease PH45a) Encodes a 3'-5' exoribonuclease, partially redundant with CER7. Involved in epicuticular wax biosynthesis. O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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