Co-expression analysis

Gene ID Contig8129_at
Gene name
Homology with ArabidopsisSimilar to At1g23145: RALFL2 (RALF-LIKE 2) (HF=5e-1)
Module size 6 genes
NF 0.66
%ile 88.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7790.80.96Contig8129_atContig8129--5e-1At1g23145RALFL2 (RALF-LIKE 2)O.I.H.G.S.X.
0.7388.70.96Contig14804_atContig14804--2e-11At1g31800CYP97A3 (CYTOCHROME P450-TYPE MONOOXYGENASE 97A3)O.I.H.G.S.X.
0.6784.70.95Contig8401_atContig8401casein kinase II alpha-7e-103At5g67380CKA1 (CASEIN KINASE ALPHA 1)O.I.H.G.S.X.
0.5369.70.96Contig21004_atContig21004--2e+1At5g19030RNA recognition motif (RRM)-containing proteinO.I.H.G.S.X.
0.5066.90.96Contig13724_atContig13724--1e-7At5g09770ribosomal protein L17 family proteinO.I.H.G.S.X.
0.5066.90.96Contig7966_atContig7966--4e+0At2g42830SHP2 (SHATTERPROOF 2)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
10.399.1GSM238412Endosperm 4DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
9.299.0GSM238413Endosperm 4DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
8.698.8GSM238410Pericarp 8DAF; seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.895.7GSM238411Pericarp 8DAF; seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.595.1GSM261021ABA-Control-rep1GSE10328ABA experimentLink to GEO
3.494.8GSM161200cold treatment rep1GSE6993Barley low temperature stressLink to GEO
3.394.6GSM161221cold treatment rep3GSE6993Barley low temperature stressLink to GEO
3.294.3GSM282026Malting_day1_Legacy_rep4GSE11200Expression data from malting barley seedsLink to GEO
3.194.1GSM261076Albina e-16 Control rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
2.993.4GSM261030Dicktoo-control-rep1GSE10329Low temperature stress in cv. DicktooLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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