Co-expression analysis

Gene ID	Contig8103_at
Gene name
Homology with Arabidopsis	Similar to At3g53235: unknown protein (HF=4e-2)
Module size	20 genes
NF	0.17
%ile	20.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.93	98.7	0.88	Contig8103_at	Contig8103	-	-	4e-2	At3g53235	unknown protein	O.I.	H.G.	S.X.	Please select
0.36	47.1	0.86	Contig8103_s_at	Contig8103	-	-	4e-2	At3g53235	unknown protein	O.I.	H.G.	S.X.	Please select
0.30	37.0	0.92	Contig5714_s_at	Contig5714	-	-	3e+0	At5g02650	unknown protein	O.I.	H.G.	S.X.	Please select
0.29	35.5	0.94	Contig14052_at	Contig14052	-	-	4e-10	At5g53130	CNGC1 (CYCLIC NUCLEOTIDE GATED CHANNEL 1)	O.I.	H.G.	S.X.	Please select
0.28	35.5	0.95	Contig3315_s_at	Contig3315	-	-	1e+0	At3g14190	unknown protein	O.I.	H.G.	S.X.	Please select
0.25	28.9	0.94	HY03N17u_s_at	HY03N17u	-	-	2e-1	At3g19560	F-box family protein	O.I.	H.G.	S.X.	Please select
0.23	26.1	0.94	Contig10301_at	Contig10301	-	-	1e-1	At1g02710	glycine-rich protein	O.I.	H.G.	S.X.	Please select
0.22	24.2	0.95	Contig6841_at	Contig6841	-	-	6e-1	At3g59980	tRNA-binding region domain-containing protein	O.I.	H.G.	S.X.	Please select
0.17	16.9	0.93	Contig6911_at	Contig6911	-	-	7e-4	At4g29980	unknown protein	O.I.	H.G.	S.X.	Please select
0.17	16.9	0.94	Contig5912_at	Contig5912	-	-	1e-16	At1g60890	phosphatidylinositol-4-phosphate 5-kinase family protein	O.I.	H.G.	S.X.	Please select
0.14	12.9	0.92	Contig6110_at	Contig6110	-	-	2e-8	At1g05500	NTMC2T2.1	O.I.	H.G.	S.X.	Please select
0.13	11.6	0.93	HVSMEf0015A06f_at	HVSMEf0015A06f	-	-	4e-15	At5g35530	40S ribosomal protein S3 (RPS3C)	O.I.	H.G.	S.X.	Please select
0.12	10.4	0.94	Contig6300_at	Contig6300	-	-	1e+0	At4g09260	unknown protein	O.I.	H.G.	S.X.	Please select
0.11	9.4	0.94	Contig7624_at	Contig7624	-	-	9e-16	At2g27680	aldo/keto reductase family protein	O.I.	H.G.	S.X.	Please select
0.10	8.4	0.94	Contig4723_at	Contig4723	-	-	2e-11	At5g41010	NRPB12	O.I.	H.G.	S.X.	Please select
0.10	8.4	0.94	HVSMEk0006H23r2_at	HVSMEk0006H23r2	-	-	2e-1	At1g18760	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.09	7.4	0.94	Contig10257_s_at	Contig10257	-	-	5e-1	At4g01090	extra-large G-protein-related	O.I.	H.G.	S.X.	Please select
0.09	7.4	0.94	Contig4666_at	Contig4666	-	-	3e-2	At5g39390	leucine-rich repeat family protein / protein kinase family protein	O.I.	H.G.	S.X.	Please select
0.07	5.8	0.92	Contig7820_s_at	Contig7820	-	-	1e-3	At1g25420	unknown protein	O.I.	H.G.	S.X.	Please select
0.06	4.8	0.92	Contig629_s_at	Contig629	-	-	2e-1	At5g22240	OFP10	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
7.0	98.4	GSM238415	Endosperm 8DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
5.8	97.8	GSM238410	Pericarp 8DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.9	97.1	GSM213436	Barley seeds with P. aeruginosa PAO1 for 12hr	GSE8618	P. aeruginosa virulent factor to barley
4.9	97.1	GSM238411	Pericarp 8DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.7	96.9	GSM238418	Endosperm 25DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.7	96.9	GSM213443	Barley seeds with P. aeruginosa PA5021 mutant for 12hr	GSE8618	P. aeruginosa virulent factor to barley
4.5	96.7	GSM238414	Endosperm 8DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.5	96.7	GSM238434	Embryo 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.0	96.0	GSM238416	Endosperm 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.8	95.7	GSM419983	Seed_Rep3	GSE16754	Comparative transcriptional profiling of organs of the barley spike

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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