Co-expression analysis

Gene ID	Contig8090_at
Gene name
Homology with Arabidopsis	Similar to At5g49215: glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein (HF=4e-9)
Module size	7 genes
NF	0.56
%ile	77.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.77	90.8	0.92	Contig8090_at	Contig8090	-	-	4e-9	At5g49215	glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein	O.I.	H.G.	S.X.	Please select
0.71	87.1	0.94	Contig9923_at	Contig9923	-	-	4e+0	At5g49050	-	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.94	Contig733_at	Contig733	-	-	8e-19	At3g04840	40S ribosomal protein S3A (RPS3aA)	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.94	HA10M05u_s_at	HA10M05u	-	-	2e-1	At4g04680	-	O.I.	H.G.	S.X.	Please select
0.42	55.2	0.94	Contig11988_at	Contig11988	-	-	1e-1	At3g18490	aspartyl protease family protein	O.I.	H.G.	S.X.	Please select
0.39	50.5	0.94	Contig4455_at	Contig4455	-	-	5e-1	At5g05370	ubiquinol-cytochrome C reductase complex ubiquinone-binding protein, putative / ubiquinol-cytochrome C reductase complex 8.2 kDa protein, putative	O.I.	H.G.	S.X.	Please select
0.38	49.5	0.94	Contig327_s_at	Contig327	-	-	2e-2	At2g23310	ATRER1C1	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
20.2	99.7	GSM238411	Pericarp 8DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
14.8	99.5	GSM238409	Pericarp 4DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
13.3	99.4	GSM238410	Pericarp 8DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
10.5	99.2	GSM238408	Pericarp 4DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
2.8	93.1	GSM261040	Dicktoo-deacclimation-rep2	GSE10329	Low temperature stress in cv. Dicktoo
2.7	92.7	GSM261030	Dicktoo-control-rep1	GSE10329	Low temperature stress in cv. Dicktoo
2.7	92.7	GSM261032	Dicktoo control-rep3	GSE10329	Low temperature stress in cv. Dicktoo
2.5	91.9	GSM160815	drought control rep3	GSE6990	Barley drought stress
2.5	91.9	GSM160744	drought control rep2	GSE6990	Barley drought stress
2.4	91.4	GSM382236	Root_Control2	GSE15295	Mercury toxicity in barley roots

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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