Co-expression analysis

Gene ID	Contig8040_at
Gene name
Homology with Arabidopsis	Similar to At3g49680: BCAT3 (BRANCHED-CHAIN AMINOTRANSFERASE 3) (HF=6e-11)
Module size	6 genes
NF	0.20
%ile	24.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	84.7	0.93	Contig8040_at	Contig8040	-	-	6e-11	At3g49680	BCAT3 (BRANCHED-CHAIN AMINOTRANSFERASE 3)	O.I.	H.G.	S.X.	Please select
0.22	24.2	0.95	Contig24535_at	Contig24535	-	-	2e-1	At3g51220	unknown protein	O.I.	H.G.	S.X.	Please select
0.16	15.3	0.94	Contig16427_at	Contig16427	-	-	9e-2	At5g10120	ethylene insensitive 3 family protein	O.I.	H.G.	S.X.	Please select
0.16	15.3	0.93	Contig11880_at	Contig11880	-	-	2e+0	At2g03110	RNA binding / nucleic acid binding	O.I.	H.G.	S.X.	Please select
0.15	14.1	0.93	Contig20118_at	Contig20118	-	-	8e-22	At5g17460	unknown protein	O.I.	H.G.	S.X.	Please select
0.11	9.4	0.94	Contig1193_at	Contig1193	-	-	2e-2	At1g01520	myb family transcription factor	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.7	96.9	GSM440972	Stressed awn_Rep1	GSE17669	Gene expression in the barley spike during drought stress
4.5	96.7	GSM398258	Martin_5d_rep1	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
4.4	96.6	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
4.2	96.3	GSM261064	Xantha s-46 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.9	95.8	GSM440974	Stressed awn_Rep3	GSE17669	Gene expression in the barley spike during drought stress
3.5	95.1	GSM398256	Martin_3d_rep2	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
3.3	94.6	GSM398257	Martin_3d_rep3	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
3.2	94.3	GSM261046	after 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.2	94.3	GSM261070	Albina f-17 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.1	94.1	GSM363464	5 mM B(OH)3 treatment (5B) - rep2	GSE14521	Late response to boron toxicity in barley leaves

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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