Co-expression analysis

Gene ID Contig8004_at
Gene name
Homology with ArabidopsisSimilar to At3g06390: integral membrane family protein (HF=2e-3)
Module size 22 genes
NF 0.18
%ile 21.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7689.80.70Contig8004_atContig8004--2e-3At3g06390integral membrane family proteinO.I.H.G.S.X.
0.4661.00.82HVSMEg0017A14f_s_atHVSMEg0017A14f--5e-1At3g58150-O.I.H.G.S.X.
0.3647.10.82HP01E21w_s_atHP01E21w--2e-1At3g20340-O.I.H.G.S.X.
0.3342.60.82HVSMEb0011P05r2_x_atHVSMEb0011P05r2--3e+0At4g05130equilibrative nucleoside transporter, putative (ENT4)O.I.H.G.S.X.
0.3138.60.79Contig338_s_atContig338--2e-39At1g09200histone H3O.I.H.G.S.X.
0.2630.40.86Contig9647_atContig9647--2e-12At2g31530EMB2289 (EMBRYO DEFECTIVE 2289)O.I.H.G.S.X.
0.2528.90.78Contig4633_x_atContig4633--2e+0At5g42635glycine-rich proteinO.I.H.G.S.X.
0.2122.60.91HR01N15u_atHR01N15u--2e+0At2g31420DNA bindingO.I.H.G.S.X.
0.2122.60.85Contig18591_atContig18591--6e-1At5g42090-O.I.H.G.S.X.
0.2122.60.91Contig21087_atContig21087--5e+0At5g42630ATS (ABERRANT TESTA SHAPE)O.I.H.G.S.X.
0.2021.10.78Contig9177_atContig9177--1e-1At2g21940shikimate kinase, putativeO.I.H.G.S.X.
0.2021.10.86baak23m11_s_atbaak23m11--1e+1At5g50070invertase/pectin methylesterase inhibitor family proteinO.I.H.G.S.X.
0.1919.60.83Contig22139_atContig22139--2e-1At1g52390unknown proteinO.I.H.G.S.X.
0.1818.20.86Contig22088_atContig22088--3e-1At5g14090unknown proteinO.I.H.G.S.X.
0.1716.90.82Contig338_atContig338--2e-39At1g09200histone H3O.I.H.G.S.X.
0.1615.30.82HM08H20r_atHM08H20r--7e-2At2g33830dormancy/auxin associated family proteinO.I.H.G.S.X.
0.1615.30.84Contig17845_atContig17845--9e-2At4g17270Mo25 family proteinO.I.H.G.S.X.
0.1412.90.86Contig26322_atContig26322--5e+0At4g14819unknown proteinO.I.H.G.S.X.
0.1311.60.79Contig4931_atContig4931--1e-22At1g75850VPS35B (VPS35 HOMOLOG B)O.I.H.G.S.X.
0.1210.40.82Contig2021_atContig2021--8e-34At2g46860AtPPa3 (Arabidopsis thaliana pyrophosphorylase 3)O.I.H.G.S.X.
0.097.40.84Contig11838_atContig11838--4e-2At3g63320protein phosphatase 2C-related / PP2C-relatedO.I.H.G.S.X.
0.032.60.79Contig15871_atContig15871--1e-7At1g51040phosphatidylinositol 4-kinase, putativeO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
8.498.8GSM215732gibberellin plus Yariv-reagent treatment rep2GSE8712The effects of Yariv-reagent on barley aleurone GA signalingLink to GEO
7.698.6GSM238411Pericarp 8DAF; seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
7.398.5GSM261079Albina e-16 Hardened rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
5.297.4GSM238410Pericarp 8DAF; seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.897.0GSM238409Pericarp 4DAF; seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.496.6GSM215729gibberellin plus Yariv-reagent treatment rep1GSE8712The effects of Yariv-reagent on barley aleurone GA signalingLink to GEO
3.995.8GSM261067Xantha s-46 Hardened rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
3.695.3GSM398263HS41-1_0d_rep3GSE15970Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley GenotypesLink to GEO
3.394.6GSM238408Pericarp 4DAF; seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.093.8GSM261061Xantha b-12 Hardened rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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