Co-expression analysis

Gene ID Contig7979_at
Gene name
Homology with ArabidopsisSimilar to At4g01820: PGP3 (P-GLYCOPROTEIN 3) (HF=3e-2)
Module size 13 genes
NF 0.08
%ile 10.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5774.90.84Contig7979_atContig7979--3e-2At4g01820PGP3 (P-GLYCOPROTEIN 3)O.I.H.G.S.X.
0.2935.50.90Contig15462_atContig15462--5e+0At2g27730unknown proteinO.I.H.G.S.X.
0.2835.50.88Contig301_x_atContig301--8e+0At5g15030paired amphipathic helix repeat-containing proteinO.I.H.G.S.X.
0.2224.20.87X84055_atX84055--7e-10At2g35690ACX5 (ACYL-COA OXIDASE 5)O.I.H.G.S.X.
0.2122.60.94Contig19648_atContig19648--4e-1At1g48200unknown proteinO.I.H.G.S.X.
0.2021.10.87Contig25131_atContig25131--6e+0At4g35410clathrin adaptor complex small chain family proteinO.I.H.G.S.X.
0.2021.10.93HU08F23u_atHU08F23u--1e+0At2g46940unknown proteinO.I.H.G.S.X.
0.1311.60.89Contig25009_atContig25009--3e+0At4g05060vesicle-associated membrane family protein / VAMP family proteinO.I.H.G.S.X.
0.086.50.91Contig14523_atContig14523--3e-2At2g05070LHCB2.2O.I.H.G.S.X.
0.075.80.88Contig14776_atContig14776--5e+0At5g56150UBC30 (ubiquitin-conjugating enzyme 30)O.I.H.G.S.X.
0.075.80.87HV_CEb0006F19r2_atHV_CEb0006F19r2--9e-1At1g14755-O.I.H.G.S.X.
0.032.60.88HI01K10T_atHI01K10T--2e+0At2g06908unknown proteinO.I.H.G.S.X.
0.021.80.87Contig1430_atContig1430--3e-54At4g27960UBC9 (UBIQUITIN CONJUGATING ENZYME 9)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
21.499.7GSM238415Endosperm 8DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
5.597.6GSM215732gibberellin plus Yariv-reagent treatment rep2GSE8712The effects of Yariv-reagent on barley aleurone GA signalingLink to GEO
4.596.7GSM238414Endosperm 8DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.496.6GSM261047after 3 days in mannitol medium rep3GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
3.695.3GSM238413Endosperm 4DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.595.1GSM261045after 3 days in mannitol medium rep1GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
3.294.3GSM372964genotype: Mla6 - pathogen isolates: K1 - time: 16 - rep3GSE14930Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance geneLink to GEO
3.093.8GSM215729gibberellin plus Yariv-reagent treatment rep1GSE8712The effects of Yariv-reagent on barley aleurone GA signalingLink to GEO
2.993.4GSM419983Seed_Rep3GSE16754Comparative transcriptional profiling of organs of the barley spikeLink to GEO
2.993.4GSM440977Control seed_Rep3GSE17669Gene expression in the barley spike during drought stressLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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