Co-expression analysis

Gene ID Contig7966_at
Gene name
Homology with ArabidopsisSimilar to At2g42830: SHP2 (SHATTERPROOF 2) (HF=4e+0)
Module size 6 genes
NF 0.57
%ile 78.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.8394.00.96Contig7966_atContig7966--4e+0At2g42830SHP2 (SHATTERPROOF 2)O.I.H.G.S.X.
0.6784.70.97Contig8129_atContig8129--5e-1At1g23145RALFL2 (RALF-LIKE 2)O.I.H.G.S.X.
0.5774.90.95Contig14804_atContig14804--2e-11At1g31800CYP97A3 (CYTOCHROME P450-TYPE MONOOXYGENASE 97A3)O.I.H.G.S.X.
0.5572.00.96Contig7904_atContig7904--2e-4At5g01220SQD2 (sulfoquinovosyldiacylglycerol 2)O.I.H.G.S.X.
0.4458.90.96Contig21004_atContig21004--2e+1At5g19030RNA recognition motif (RRM)-containing proteinO.I.H.G.S.X.
0.2224.20.96Contig2990_atContig2990--1e-4At3g12500ATHCHIB (ARABIDOPSIS THALIANA BASIC CHITINASE)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.895.7GSM161200cold treatment rep1GSE6993Barley low temperature stressLink to GEO
3.595.1GSM161221cold treatment rep3GSE6993Barley low temperature stressLink to GEO
3.194.1GSM160815drought control rep3GSE6990Barley drought stressLink to GEO
3.194.1GSM261056Xantha b-12 Cotrol rep1GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
3.194.1GSM261076Albina e-16 Control rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
3.194.1GSM261032Dicktoo control-rep3GSE10329Low temperature stress in cv. DicktooLink to GEO
2.993.4GSM261062Xantha s-46 Control rep1GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
2.993.4GSM261030Dicktoo-control-rep1GSE10329Low temperature stress in cv. DicktooLink to GEO
2.993.4GSM160744drought control rep2GSE6990Barley drought stressLink to GEO
2.993.4GSM261034Dicktoo-chilling-rep2GSE10329Low temperature stress in cv. DicktooLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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