Co-expression analysis

Gene ID	Contig7953_at
Gene name
Homology with Arabidopsis	Similar to At2g03510: band 7 family protein (HF=3e-28)
Module size	6 genes
NF	0.95
%ile	99.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.1	0.97	Contig7953_at	Contig7953	-	-	3e-28	At2g03510	band 7 family protein	O.I.	H.G.	S.X.	Please select
0.91	98.1	0.97	Contig24248_at	Contig24248	-	-	1e+0	At5g50270	F-box family protein	O.I.	H.G.	S.X.	Please select
0.91	98.1	0.97	HVSMEm0013G04r2_x_at	HVSMEm0013G04r2	-	-	5e+0	At1g59950	aldo/keto reductase, putative	O.I.	H.G.	S.X.	Please select
0.91	98.1	0.97	Contig15744_at	Contig15744	-	-	2e-15	At5g19420	Ran GTPase binding / chromatin binding / zinc ion binding	O.I.	H.G.	S.X.	Please select
0.80	92.5	0.98	Contig18848_at	Contig18848	-	-	1e-1	At4g36780	transcription regulator	O.I.	H.G.	S.X.	Please select
0.77	90.8	0.97	Contig14983_at	Contig14983	-	-	5e+0	At5g30520	unknown protein	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
7.1	98.4	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.4	97.5	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
5.4	97.5	GSM238429	Embryo 16DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
5.1	97.3	GSM282032	Malting_day1_Morex_rep1	GSE11200	Expression data from malting barley seeds
4.8	97.0	GSM261070	Albina f-17 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.4	96.6	GSM282035	Malting_day4_Morex_rep1	GSE11200	Expression data from malting barley seeds
4.1	96.2	GSM238430	Embryo 25DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.1	96.2	GSM372998	genotype: 11542 - pathogen isolates: K1 - time: 16 - rep1	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
4.1	96.2	GSM261047	after 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.5	95.1	GSM238431	Embryo 25DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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