Co-expression analysis

Gene ID Contig7904_at
Gene name
Homology with ArabidopsisSimilar to At5g01220: SQD2 (sulfoquinovosyldiacylglycerol 2) (HF=2e-4)
Module size 7 genes
NF 0.53
%ile 73.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7187.10.96Contig7904_atContig7904--2e-4At5g01220SQD2 (sulfoquinovosyldiacylglycerol 2)O.I.H.G.S.X.
0.5066.90.96Contig8311_atContig8311--5e-15At1g65430zinc finger protein-relatedO.I.H.G.S.X.
0.4661.00.96Contig332_atContig332--3e-6At5g54670ATK3 (ARABIDOPSIS THALIANA KINESIN 3)O.I.H.G.S.X.
0.4458.90.97Contig8129_atContig8129--5e-1At1g23145RALFL2 (RALF-LIKE 2)O.I.H.G.S.X.
0.4458.90.97Contig7966_atContig7966--4e+0At2g42830SHP2 (SHATTERPROOF 2)O.I.H.G.S.X.
0.4053.10.96Contig12612_atContig12612--5e-3At1g01170ozone-responsive stress-related protein, putativeO.I.H.G.S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.695.3GSM215730Control (DMSO) treatment rep2GSE8712The effects of Yariv-reagent on barley aleurone GA signalingLink to GEO
3.595.1GSM261076Albina e-16 Control rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
3.194.1GSM161200cold treatment rep1GSE6993Barley low temperature stressLink to GEO
3.093.8GSM161221cold treatment rep3GSE6993Barley low temperature stressLink to GEO
2.993.4GSM282037Malting_day1_Morex_rep2GSE11200Expression data from malting barley seedsLink to GEO
2.893.1GSM16082238% SWC rep3GSE6990Barley drought stressLink to GEO
2.692.3GSM238428Embryo 16DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
2.591.9GSM215727Control (DMSO) treatment rep1GSE8712The effects of Yariv-reagent on barley aleurone GA signalingLink to GEO
2.591.9GSM419973Lemma_Rep2GSE16754Comparative transcriptional profiling of organs of the barley spikeLink to GEO
2.591.9GSM440958Control lemma_Rep2GSE17669Gene expression in the barley spike during drought stressLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

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