Co-expression analysis

Gene ID	Contig78_s_at
Gene name
Homology with Arabidopsis	Similar to At1g15690: AVP1 (HF=4e-5)
Module size	6 genes
NF	0.40
%ile	55.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.1	0.90	Contig78_s_at	Contig78	-	-	4e-5	At1g15690	AVP1	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.90	Contig20846_at	Contig20846	-	-	3e-6	At4g36860	zinc ion binding	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.92	Contig18444_at	Contig18444	-	-	2e+0	At1g08650	PPCK1 (PHOSPHOENOLPYRUVATE CARBOXYLASE KINASE)	O.I.	H.G.	S.X.	Please select
0.36	47.1	0.90	Contig1682_at	Contig1682	-	-	2e+0	At4g24972	TPD1 (TAPETUM DETERMINANT 1)	O.I.	H.G.	S.X.	Please select
0.24	27.2	0.90	Contig18440_at	Contig18440	-	-	2e+0	At3g56590	hydroxyproline-rich glycoprotein family protein	O.I.	H.G.	S.X.	Please select
0.19	19.6	0.90	Contig14353_at	Contig14353	-	-	9e-3	At1g49950	DNA-binding protein, putative	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
6.7	98.3	GSM238429	Embryo 16DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
6.5	98.2	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.7	95.5	GSM440960	Stressed lemma_Rep1	GSE17669	Gene expression in the barley spike during drought stress
3.5	95.1	GSM71156	Morex stress and unstress replicate 3	GSE3170	Barley single feature polymorphisms and drought stress gene expression
3.5	95.1	GSM282039	Malting_day4_Morex_rep2	GSE11200	Expression data from malting barley seeds
3.2	94.3	GSM282035	Malting_day4_Morex_rep1	GSE11200	Expression data from malting barley seeds
3.2	94.3	GSM282020	Malting_day4_Legacy_rep 3	GSE11200	Expression data from malting barley seeds
3.1	94.1	GSM215728	gibberellin treatment rep1	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
3.1	94.1	GSM238409	Pericarp 4DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.0	93.8	GSM146379	Maythorpe shoot Salt, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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