Co-expression analysis

Gene ID Contig7886_at
Gene name
Homology with ArabidopsisSimilar to At5g39790: 5'-AMP-activated protein kinase beta-1 subunit-related (HF=8e+0)
Module size 6 genes
NF 0.49
%ile 68.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6784.70.96Contig7886_atContig7886--8e+0At5g397905'-AMP-activated protein kinase beta-1 subunit-relatedO.I.H.G.S.X.
0.6077.30.96Contig5960_atContig5960--1e-16At3g18880ribosomal protein S17 family proteinO.I.H.G.S.X.
0.4762.20.95Contig17036_atContig17036--4e-7At3g27720zinc finger protein-relatedO.I.H.G.S.X.
0.4661.00.96Contig11980_atContig11980--3e-2At3g57920SPL15 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 15)O.I.H.G.S.X.
0.3342.60.97Contig6981_atContig6981--4e-5At4g00170vesicle-associated membrane family protein / VAMP family proteinO.I.H.G.S.X.
0.3037.00.96Contig10592_atContig10592--1e-2At5g26180NOL1/NOP2/sun family proteinO.I.H.G.S.X.

VF%ileCCGene IDRepr. IDGene nameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.6178.70.94Contig3651_s_atContig3651--1e+1At5g25010unknown proteinO.I.H.G.S.X.
0.6077.30.95HK06M08r_atHK06M08r--6e+0At5g01810CIPK15 (CBL-INTERACTING PROTEIN KINASE 15)O.I.H.G.S.X.
0.5066.90.94Contig20506_atContig20506--1e-4At2g44410protein binding / zinc ion bindingO.I.H.G.S.X.
0.4762.20.94Contig9773_atContig9773--3e-6At5g55910D6PK (D6 PROTEIN KINASE)O.I.H.G.S.X.
0.4661.00.94HV_CEb0022N15r2_atHV_CEb0022N15r2--4e+0At4g00895ATP synthase delta chain-relatedO.I.H.G.S.X.
0.4661.00.95Contig24230_atContig24230--3e-1At4g21610LOL2 (LSD ONE LIKE 2)O.I.H.G.S.X.
0.4458.90.95Contig12811_atContig12811--3e-5At5g01200myb family transcription factorO.I.H.G.S.X.
0.4458.90.95HVSMEm0004B09r2_atHVSMEm0004B09r2--4e+0At5g63220unknown proteinO.I.H.G.S.X.
0.4356.40.95Contig14126_atContig14126--2e-6At1g65700small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putativeO.I.H.G.S.X.
0.4053.10.95Contig2663_atContig2663--3e+0At4g04632ATP binding / protein kinaseO.I.H.G.S.X.
0.4053.10.96Contig5115_atContig5115--3e-6At2g32600hydroxyproline-rich glycoprotein family proteinO.I.H.G.S.X.
0.3849.50.95Contig13294_atContig13294--6e+0At5g28463unknown proteinO.I.H.G.S.X.
0.3647.10.95HVSMEa0012A19r2_x_atHVSMEa0012A19r2--1e+1At2g07505unknown proteinO.I.H.G.S.X.
0.3342.60.92Contig5317_s_atContig5317--6e+0At5g62360invertase/pectin methylesterase inhibitor family proteinO.I.H.G.S.X.
0.3342.60.92Contig3651_atContig3651--1e+1At5g25010unknown proteinO.I.H.G.S.X.
0.3342.60.95HVSMEm0008J11r2_atHVSMEm0008J11r2--4e+0At1g56233-O.I.H.G.S.X.
0.3342.60.95EBpi01_SQ004_K07_s_atEBpi01_SQ004_K07--2e+0At1g50470-O.I.H.G.S.X.
0.3342.60.96Contig8742_atContig8742--1e-6At3g61600ATPOB1O.I.H.G.S.X.
0.3240.30.95Contig16196_atContig16196--2e-2At4g20470unknown proteinO.I.H.G.S.X.
0.3138.60.94Contig5669_atContig5669--2e-4At1g77090thylakoid lumenal 29.8 kDa proteinO.I.H.G.S.X.
0.3138.60.96Contig14103_atContig14103--2e-1At4g19040EDR2O.I.H.G.S.X.
0.2935.50.94Contig1125_x_atContig1125--1e-22At1g07790HTB1O.I.H.G.S.X.
0.2732.10.94Contig5216_atContig5216--2e+0At5g13180ANAC083 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 83)O.I.H.G.S.X.
0.2732.10.96Contig4949_atContig4949--3e-53At5g13000ATGSL12 (glucan synthase-like 12)O.I.H.G.S.X.
0.2528.90.93Contig24087_atContig24087--3e-1At5g50300xanthine/uracil/vitamin C permease family proteinO.I.H.G.S.X.
0.2528.90.94Contig16323_atContig16323--1e+0At5g10970zinc finger (C2H2 type) family proteinO.I.H.G.S.X.
0.2528.90.95Contig7170_atContig7170--2e+0At1g32540LOL1 (LSD ONE LIKE 1)O.I.H.G.S.X.
0.2528.90.95Contig14361_atContig14361--2e-1At2g11005glycine-rich proteinO.I.H.G.S.X.


Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.997.1GSM238428Embryo 16DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.496.6GSM238408Pericarp 4DAF; seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.196.2GSM238429Embryo 16DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.196.2GSM238410Pericarp 8DAF; seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.595.1GSM146375Maythorpe shoot Control, biological rep1GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
3.494.8GSM146373Golden Promise shoot Salt, biological rep 2GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
3.494.8GSM238411Pericarp 8DAF; seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.394.6GSM146369Golden Promise shoot Control, biological rep1GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
3.394.6GSM146370Golden Promise shoot Control, biological rep 2GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
3.194.1GSM146372Golden Promise shoot Salt, biological rep 1GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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