Co-expression analysis

Gene ID	Contig7886_at
Gene name
Homology with Arabidopsis	Similar to At5g39790: 5'-AMP-activated protein kinase beta-1 subunit-related (HF=8e+0)
Module size	6 genes
NF	0.49
%ile	68.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	84.7	0.96	Contig7886_at	Contig7886	-	-	8e+0	At5g39790	5'-AMP-activated protein kinase beta-1 subunit-related	O.I.	H.G.	S.X.	Please select
0.60	77.3	0.96	Contig5960_at	Contig5960	-	-	1e-16	At3g18880	ribosomal protein S17 family protein	O.I.	H.G.	S.X.	Please select
0.47	62.2	0.95	Contig17036_at	Contig17036	-	-	4e-7	At3g27720	zinc finger protein-related	O.I.	H.G.	S.X.	Please select
0.46	61.0	0.96	Contig11980_at	Contig11980	-	-	3e-2	At3g57920	SPL15 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 15)	O.I.	H.G.	S.X.	Please select
0.33	42.6	0.97	Contig6981_at	Contig6981	-	-	4e-5	At4g00170	vesicle-associated membrane family protein / VAMP family protein	O.I.	H.G.	S.X.	Please select
0.30	37.0	0.96	Contig10592_at	Contig10592	-	-	1e-2	At5g26180	NOL1/NOP2/sun family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.9	97.1	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.4	96.6	GSM238408	Pericarp 4DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.1	96.2	GSM238429	Embryo 16DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.1	96.2	GSM238410	Pericarp 8DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.5	95.1	GSM146375	Maythorpe shoot Control, biological rep1	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
3.4	94.8	GSM146373	Golden Promise shoot Salt, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
3.4	94.8	GSM238411	Pericarp 8DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.3	94.6	GSM146369	Golden Promise shoot Control, biological rep1	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
3.3	94.6	GSM146370	Golden Promise shoot Control, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
3.1	94.1	GSM146372	Golden Promise shoot Salt, biological rep 1	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise

Inter-species module comparison

A co-expression module including the maize gene, Zm.4999.1.S1_at, orthologous to the query gene, Contig7886_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	99.0	Zm.4999.1.S1_at	At5g39790	-	-	7e-1	At5g04047	-	O.I.	H.G.	S.X.	Please select
0.80	94.0	Zm.6951.1.A1_at	At5g39790	-	-	3e+0	At1g60710	ATB2	O.I.	H.G.	S.X.	Please select
0.80	94.0	Zm.7409.1.A1_at	At5g39790	hypothetical protein LOC100191559	-	2e-1	At4g15790	unknown protein	O.I.	H.G.	S.X.	Please select
0.67	85.8	Zm.556.2.A1_a_at	At5g39790	glutathione transferase31	-	6e-4	At5g62480	ATGSTU9 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 9)	O.I.	H.G.	S.X.	Please select
0.56	74.4	Zm.14710.2.A1_at	At5g39790	-	-	2e-1	At4g03565	-	O.I.	H.G.	S.X.	Please select
0.43	52.8	Zm.7411.1.A1_at	At5g39790	hypothetical protein LOC100277462	-	2e+0	At2g14390	unknown protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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