CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Contig7886_at

Gene name
Homology with Arabidopsis Similar to At5g39790: 5'-AMP-activated protein kinase beta-1 subunit-related (HF=8e+0)

Module size 6 genes

NF 0.49

%ile 68.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.67 84.7 0.96 Contig7886_at Contig7886 - - 8e+0 At5g39790 5'-AMP-activated protein kinase beta-1 subunit-related O.I. H.G. S.X.
0.60 77.3 0.96 Contig5960_at Contig5960 - - 1e-16 At3g18880 ribosomal protein S17 family protein O.I. H.G. S.X.
0.47 62.2 0.95 Contig17036_at Contig17036 - - 4e-7 At3g27720 zinc finger protein-related O.I. H.G. S.X.
0.46 61.0 0.96 Contig11980_at Contig11980 - - 3e-2 At3g57920 SPL15 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 15) O.I. H.G. S.X.
0.33 42.6 0.97 Contig6981_at Contig6981 - - 4e-5 At4g00170 vesicle-associated membrane family protein / VAMP family protein O.I. H.G. S.X.
0.30 37.0 0.96 Contig10592_at Contig10592 - - 1e-2 At5g26180 NOL1/NOP2/sun family protein O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.9 97.1 GSM238428 Embryo 16DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
4.4 96.6 GSM238408 Pericarp 4DAF; seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
4.1 96.2 GSM238429 Embryo 16DAF; Seed development; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
4.1 96.2 GSM238410 Pericarp 8DAF; seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
3.5 95.1 GSM146375 Maythorpe shoot Control, biological rep1 GSE6325 Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
3.4 94.8 GSM146373 Golden Promise shoot Salt, biological rep 2 GSE6325 Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
3.4 94.8 GSM238411 Pericarp 8DAF; seed development; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
3.3 94.6 GSM146369 Golden Promise shoot Control, biological rep1 GSE6325 Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
3.3 94.6 GSM146370 Golden Promise shoot Control, biological rep 2 GSE6325 Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
3.1 94.1 GSM146372 Golden Promise shoot Salt, biological rep 1 GSE6325 Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.4227.1.S1_at, orthologous to the query gene, Contig7886_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.80 96.0 PtpAffx.4227.1.S1_at At5g39790 hypothetical protein - 5e-1 At3g59870 unknown protein O.I. H.G. S.X.
0.46 73.7 Ptp.6489.1.S1_s_at At5g39790 - - 3e-21 At3g52730 ubiquinol-cytochrome C reductase UQCRX/QCR9-like family protein O.I. H.G. S.X.
0.36 61.6 PtpAffx.208240.1.S1_at At5g39790 hypothetical protein - 3e-2 At3g57810 OTU-like cysteine protease family protein O.I. H.G. S.X.
0.33 57.5 PtpAffx.62771.1.A1_at At5g39790 hypothetical protein - 6e+0 At5g21005 unknown protein O.I. H.G. S.X.
0.23 40.5 Ptp.4920.1.S1_s_at At5g39790 hypothetical protein - 2e-22 At1g11360 universal stress protein (USP) family protein O.I. H.G. S.X.
0.15 25.3 PtpAffx.1224.2.S1_a_at At5g39790 hypothetical protein - 2e+0 At1g77610 glucose-6-phosphate/phosphate translocator-related O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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