Co-expression analysis

Gene ID	Contig7871_s_at
Gene name
Homology with Arabidopsis	Similar to At1g75370: SEC14 cytosolic factor, putative / phosphatidylinositol transfer-like protein, putative (HF=1e-9)
Module size	26 genes
NF	0.17
%ile	20.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.86	94.8	0.86	Contig7871_s_at	Contig7871	-	-	1e-9	At1g75370	SEC14 cytosolic factor, putative / phosphatidylinositol transfer-like protein, putative	O.I.	H.G.	S.X.	Please select
0.33	42.6	0.91	Contig4919_at	Contig4919	-	-	6e+0	At5g06080	LBD33 (LOB DOMAIN-CONTAINING PROTEIN 33)	O.I.	H.G.	S.X.	Please select
0.31	38.6	0.91	Contig16536_at	Contig16536	-	-	5e+0	At3g08690	UBC11 (UBIQUITIN-CONJUGATING ENZYME 11)	O.I.	H.G.	S.X.	Please select
0.29	35.5	0.93	Contig8278_at	Contig8278	-	-	1e-3	At3g55260	HEXO1 (BETA-HEXOSAMINIDASE 1)	O.I.	H.G.	S.X.	Please select
0.28	35.5	0.93	Contig9735_at	Contig9735	-	-	2e-1	At1g80245	-	O.I.	H.G.	S.X.	Please select
0.25	28.9	0.91	Contig6170_at	Contig6170	-	-	1e-1	At4g27890	nuclear movement family protein	O.I.	H.G.	S.X.	Please select
0.24	27.2	0.90	Contig4801_at	Contig4801	-	-	3e-12	At2g45790	PMM (PHOSPHOMANNOMUTASE)	O.I.	H.G.	S.X.	Please select
0.22	24.2	0.91	Contig9713_s_at	Contig9713	-	-	1e+0	At2g28760	NAD-dependent epimerase/dehydratase family protein	O.I.	H.G.	S.X.	Please select
0.19	19.6	0.92	Contig8063_at	Contig8063	-	-	2e-9	At5g18100	CSD3 (copper/zinc superoxide dismutase 3)	O.I.	H.G.	S.X.	Please select
0.18	18.2	0.92	Contig25923_at	Contig25923	-	-	1e+0	At5g21060	homoserine dehydrogenase family protein	O.I.	H.G.	S.X.	Please select
0.18	18.2	0.94	Contig10545_at	Contig10545	-	-	3e+0	At5g53720	RNA recognition motif (RRM)-containing protein	O.I.	H.G.	S.X.	Please select
0.17	16.9	0.93	Contig15041_at	Contig15041	-	-	2e+0	At3g55740	PROT2 (PROLINE TRANSPORTER 2)	O.I.	H.G.	S.X.	Please select
0.17	16.9	0.93	Contig16870_at	Contig16870	-	-	5e-11	At2g36570	leucine-rich repeat transmembrane protein kinase, putative	O.I.	H.G.	S.X.	Please select
0.17	16.9	0.94	Contig14094_at	Contig14094	-	-	1e+0	At5g55135	unknown protein	O.I.	H.G.	S.X.	Please select
0.16	15.3	0.93	Contig1927_at	Contig1927	-	-	4e-12	At5g28840	GME (GDP-D-MANNOSE 3',5'-EPIMERASE)	O.I.	H.G.	S.X.	Please select
0.15	14.1	0.92	Contig2550_x_at	Contig2550	pathogenesis-related protein 4	-	4e-4	At3g04720	PR4 (PATHOGENESIS-RELATED 4)	O.I.	H.G.	S.X.	Please select
0.14	12.9	0.96	Contig4685_at	Contig4685	-	-	1e-7	At5g06690	WCRKC1 (WCRKC THIOREDOXIN 1)	O.I.	H.G.	S.X.	Please select
0.14	12.9	0.92	Contig16491_at	Contig16491	-	-	2e-26	At3g19240	-	O.I.	H.G.	S.X.	Please select
0.11	9.4	0.92	HV09L12u_at	HV09L12u	-	-	4e+0	At2g29870	major intrinsic family protein / MIP family protein	O.I.	H.G.	S.X.	Please select
0.11	9.4	0.93	rbaal35m01_s_at	rbaal35m01	-	-	2e-8	At3g09550	protein binding	O.I.	H.G.	S.X.	Please select
0.10	8.4	0.92	HV_CEb0012P03f_at	HV_CEb0012P03f	-	-	3e+0	At5g17390	universal stress protein (USP) family protein	O.I.	H.G.	S.X.	Please select
0.10	8.4	0.90	Contig10346_at	Contig10346	-	-	8e-1	At2g22080	unknown protein	O.I.	H.G.	S.X.	Please select
0.10	8.4	0.94	Contig3718_s_at	Contig3718	-	-	2e-9	At3g25690	CHUP1 (CHLOROPLAST UNUSUAL POSITIONING 1)	O.I.	H.G.	S.X.	Please select
0.08	6.5	0.88	Contig24328_at	Contig24328	-	-	1e+0	At1g03055	unknown protein	O.I.	H.G.	S.X.	Please select
0.07	5.8	0.89	HT06F04u_at	HT06F04u	-	-	5e-14	At4g05050	UBQ11 (UBIQUITIN 11)	O.I.	H.G.	S.X.	Please select
0.07	5.8	0.92	Contig12716_at	Contig12716	-	-	3e-3	At3g07180	GPI transamidase component PIG-S-related	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.1	97.3	GSM215731	gibberellin treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
4.6	96.8	GSM261070	Albina f-17 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.8	95.7	GSM261064	Xantha s-46 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.4	94.8	GSM261079	Albina e-16 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.4	94.8	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.4	94.8	GSM261067	Xantha s-46 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.2	94.3	GSM261058	Xantha b-12 Cotrol rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.2	94.3	GSM261073	Albina f-17 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.1	94.1	GSM261061	Xantha b-12 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.0	93.8	GSM398263	HS41-1_0d_rep3	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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