Co-expression analysis

Gene ID	Contig77_s_at
Gene name
Homology with Arabidopsis	Similar to At2g02850: ARPN (PLANTACYANIN) (HF=3e-4)
Module size	22 genes
NF	0.20
%ile	24.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.98	100.0	0.92	Contig77_s_at	Contig77	-	-	3e-4	At2g02850	ARPN (PLANTACYANIN)	O.I.	H.G.	S.X.	Please select
0.40	53.1	0.94	Contig9226_at	Contig9226	-	-	3e-3	At1g58080	ATATP-PRT1 (ATP PHOSPHORIBOSYL TRANSFERASE 1)	O.I.	H.G.	S.X.	Please select
0.37	47.9	0.95	Contig333_M_at	Contig333_M	-	-			-	O.I.	H.G.	S.X.	Please select
0.33	42.6	0.95	Contig7662_at	Contig7662	-	-	5e+0	At5g59780	MYB59 (MYB DOMAIN PROTEIN 59)	O.I.	H.G.	S.X.	Please select
0.32	40.3	0.95	Contig4380_at	Contig4380	-	-	2e-2	At2g33450	50S ribosomal protein L28, chloroplast (CL28)	O.I.	H.G.	S.X.	Please select
0.29	35.5	0.94	Contig278_at	Contig278	-	-	9e-41	At1g77120	ADH1 (ALCOHOL DEHYDROGENASE 1)	O.I.	H.G.	S.X.	Please select
0.23	26.1	0.97	HVSMEm0005B12r2_at	HVSMEm0005B12r2	-	-	3e-1	At3g23727	SCRL12 (SCR-Like 12)	O.I.	H.G.	S.X.	Please select
0.22	24.2	0.94	Contig523_x_at	Contig523	B3-hordein fragment	-	6e-1	At5g53590	auxin-responsive family protein	O.I.	H.G.	S.X.	Please select
0.22	24.2	0.94	Contig8913_at	Contig8913	-	-	3e-9	At1g22200	unknown protein	O.I.	H.G.	S.X.	Please select
0.22	24.2	0.95	Contig23773_at	Contig23773	-	-	1e+0	At5g14070	ROXY2	O.I.	H.G.	S.X.	Please select
0.19	19.6	0.96	Contig9510_at	Contig9510	-	-	6e-14	At4g39850	PXA1 (PEROXISOMAL ABC TRANSPORTER 1)	O.I.	H.G.	S.X.	Please select
0.18	18.2	0.95	HA03B13u_s_at	HA03B13u	-	-	8e-4	At5g67560	ATARLA1D (ADP-ribosylation factor-like A1D)	O.I.	H.G.	S.X.	Please select
0.17	16.9	0.95	Contig101_at	Contig101	-	-	1e-2	At1g06030	pfkB-type carbohydrate kinase family protein	O.I.	H.G.	S.X.	Please select
0.17	16.9	0.95	Contig9913_at	Contig9913	-	-	2e-18	At2g36130	peptidyl-prolyl cis-trans isomerase, putative / cyclophilin, putative / rotamase, putative	O.I.	H.G.	S.X.	Please select
0.15	14.1	0.96	Contig11279_at	Contig11279	-	-	1e+0	At3g01830	calmodulin-related protein, putative	O.I.	H.G.	S.X.	Please select
0.14	12.9	0.95	HY08N07u_s_at	HY08N07u	-	-	4e+0	At3g28870	-	O.I.	H.G.	S.X.	Please select
0.14	12.9	0.96	Contig398_s_at	Contig398	-	-	7e-13	At2g44050	COS1 (COI1 SUPPRESSOR1)	O.I.	H.G.	S.X.	Please select
0.13	11.6	0.94	Contig9198_at	Contig9198	-	-	1e-22	At3g03940	protein kinase family protein	O.I.	H.G.	S.X.	Please select
0.13	11.6	0.96	Contig2580_3_s_at	Contig2580_3	-	-			-	O.I.	H.G.	S.X.	Please select
0.10	8.4	0.94	Contig3345_at	Contig3345	-	-	4e-7	At5g46020	unknown protein	O.I.	H.G.	S.X.	Please select
0.08	6.5	0.94	Contig15873_at	Contig15873	-	-	3e+0	At3g43490	zinc knuckle (CCHC-type) family protein	O.I.	H.G.	S.X.	Please select
0.08	6.5	0.94	Contig12184_at	Contig12184	-	-	5e-1	At1g58350	ZW18	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.5	95.1	GSM440968	Stressed palea_Rep3	GSE17669	Gene expression in the barley spike during drought stress
3.2	94.3	GSM440960	Stressed lemma_Rep1	GSE17669	Gene expression in the barley spike during drought stress
3.2	94.3	GSM440966	Stressed palea_Rep1	GSE17669	Gene expression in the barley spike during drought stress
2.9	93.4	GSM215732	gibberellin plus Yariv-reagent treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
2.9	93.4	GSM440967	Stressed palea_Rep2	GSE17669	Gene expression in the barley spike during drought stress
2.8	93.1	GSM440962	Stressed lemma_Rep3	GSE17669	Gene expression in the barley spike during drought stress
2.7	92.7	GSM440972	Stressed awn_Rep1	GSE17669	Gene expression in the barley spike during drought stress
2.6	92.3	GSM440961	Stressed lemma_Rep2	GSE17669	Gene expression in the barley spike during drought stress
2.4	91.4	GSM440974	Stressed awn_Rep3	GSE17669	Gene expression in the barley spike during drought stress
2.4	91.4	GSM215730	Control (DMSO) treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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