Co-expression analysis

Gene ID	Contig7798_at
Gene name
Homology with Arabidopsis	Similar to At4g31550: WRKY11 (HF=7e-13)
Module size	6 genes
NF	0.32
%ile	42.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.46	61.0	0.95	Contig7798_at	Contig7798	-	-	7e-13	At4g31550	WRKY11	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.96	Contig11766_at	Contig11766	-	-	1e-2	At5g50400	PAP27 (PURPLE ACID PHOSPHATASE 27)	O.I.	H.G.	S.X.	Please select
0.30	37.0	0.96	Contig8870_at	Contig8870	-	-	1e-10	At5g56290	PEX5 (PEROXIN 5)	O.I.	H.G.	S.X.	Please select
0.23	26.1	0.96	Contig3532_at	Contig3532	-	-	8e+0	At4g32605	-	O.I.	H.G.	S.X.	Please select
0.23	26.1	0.96	Contig5297_at	Contig5297	-	-	4e-16	At1g64550	ATGCN3	O.I.	H.G.	S.X.	Please select
0.17	16.9	0.96	Contig13467_at	Contig13467	-	-	5e-10	At1g77180	chromatin protein family	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
6.5	98.2	GSM238435	Embryo 24 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
6.2	98.0	GSM238434	Embryo 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.0	97.2	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
4.7	96.9	GSM261073	Albina f-17 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.2	96.3	GSM261046	after 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
4.0	96.0	GSM440966	Stressed palea_Rep1	GSE17669	Gene expression in the barley spike during drought stress
3.9	95.8	GSM261047	after 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.8	95.7	GSM238430	Embryo 25DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.6	95.3	GSM238432	Embryo 0 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.5	95.1	GSM238431	Embryo 25DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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