Co-expression analysis

Gene ID Contig7779_at
Gene name
Homology with ArabidopsisSimilar to At4g31720: TAFII15 (TBP-ASSOCIATED FACTOR II 15) (HF=1e-13)
Module size 9 genes
NF 0.43
%ile 60.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.8494.30.88Contig7779_atContig7779--1e-13At4g31720TAFII15 (TBP-ASSOCIATED FACTOR II 15)O.I.H.G.S.X.
0.6784.70.92HR01A09u_atHR01A09u--2e+0At5g55000FIP2O.I.H.G.S.X.
0.5674.30.90Contig75_x_atContig75--8e-45At1g09200histone H3O.I.H.G.S.X.
0.4863.20.91Contig6325_atContig6325--4e-1At5g25490zinc finger (Ran-binding) family proteinO.I.H.G.S.X.
0.4458.90.92Contig11154_atContig11154--1e-15At5g66210CPK28O.I.H.G.S.X.
0.4255.20.92Contig24268_atContig24268--2e+0At5g57345unknown proteinO.I.H.G.S.X.
0.3037.00.90Contig11518_atContig11518--5e-9At1g63500ATP binding / binding / protein kinase/ protein serine/threonine kinase/ protein tyrosine kinaseO.I.H.G.S.X.
0.2528.90.91Contig11653_s_atContig11653--8e+0At4g40011unknown proteinO.I.H.G.S.X.
0.2528.90.92HY02G07u_atHY02G07u--4e+0At2g28420lactoylglutathione lyase family protein / glyoxalase I family proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.995.8GSM372955genotype: Mla6 - pathogen isolates: 5874 - time: 32 - rep3GSE14930Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance geneLink to GEO
3.695.3GSM160815drought control rep3GSE6990Barley drought stressLink to GEO
3.695.3GSM161200cold treatment rep1GSE6993Barley low temperature stressLink to GEO
3.494.8GSM373004genotype: 11542 - pathogen isolates: K1 - time: 24 - rep1GSE14930Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance geneLink to GEO
3.494.8GSM372967genotype: Mla6 - pathogen isolates: K1 - time: 20 - rep3GSE14930Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance geneLink to GEO
3.194.1GSM372985genotype: 11542 - pathogen isolates: 5874 - time: 20 - rep3GSE14930Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance geneLink to GEO
3.194.1GSM261032Dicktoo control-rep3GSE10329Low temperature stress in cv. DicktooLink to GEO
2.993.4GSM372963genotype: Mla6 - pathogen isolates: K1 - time: 16 - rep2GSE14930Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance geneLink to GEO
2.893.1GSM372946genotype: Mla6 - pathogen isolates: 5874 - time: 16 - rep3GSE14930Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance geneLink to GEO
2.893.1GSM372998genotype: 11542 - pathogen isolates: K1 - time: 16 - rep1GSE14930Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance geneLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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