Co-expression analysis

Gene ID Contig7739_at
Gene name
Homology with ArabidopsisSimilar to At4g39660: AGT2 (ALANINE:GLYOXYLATE AMINOTRANSFERASE 2) (HF=9e-7)
Module size 6 genes
NF 0.27
%ile 34.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6784.70.95Contig7739_atContig7739--9e-7At4g39660AGT2 (ALANINE:GLYOXYLATE AMINOTRANSFERASE 2)O.I.H.G.S.X.
0.5369.70.95Contig1108_s_atContig1108--1e-71At3g52590UBQ1 (UBIQUITIN EXTENSION PROTEIN 1)O.I.H.G.S.X.
0.3342.60.95Contig11324_atContig11324--6e-10At5g52410unknown proteinO.I.H.G.S.X.
0.2732.10.95Contig9522_atContig9522--5e-15At5g05630amino acid permease family proteinO.I.H.G.S.X.
0.2122.60.95Contig12639_atContig12639--3e+0At5g07220ATBAG3 (ARABIDOPSIS THALIANA BCL-2-ASSOCIATED ATHANOGENE 3)O.I.H.G.S.X.
0.1210.40.95EBro08_SQ012_O08_s_atEBro08_SQ012_O08--3e+0At1g26762unknown proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
7.498.5GSM431573pathogen isolates: Polymyxa betae - rep3GSE17240Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betaeLink to GEO
7.098.4GSM431569pathogen isolates: Mock inoculated control - rep2GSE17240Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betaeLink to GEO
6.498.1GSM431572pathogen isolates: Polymyxa betae - rep2GSE17240Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betaeLink to GEO
5.697.7GSM261067Xantha s-46 Hardened rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
5.597.6GSM431547pathogen isolates: Mock - rep2GSE17238Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminisLink to GEO
5.397.4GSM431571pathogen isolates: Polymyxa betae - rep1GSE17240Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betaeLink to GEO
5.297.4GSM238437Embryo 48 h; Seed germination; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
5.197.3GSM261078Albina e-16 Hardened rep2GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
5.097.2GSM431570pathogen isolates: Mock inoculated control - rep3GSE17240Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betaeLink to GEO
4.997.1GSM238439Embryo 72 h; Seed germination; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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