Co-expression analysis

Gene ID	Contig7652_at
Gene name
Homology with Arabidopsis	Similar to At3g56660: BZIP49 (BASIC REGION/LEUCINE ZIPPER MOTIF PROTEIN 49) (HF=3e-3)
Module size	6 genes
NF	0.79
%ile	96.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.1	0.97	Contig7652_at	Contig7652	-	-	3e-3	At3g56660	BZIP49 (BASIC REGION/LEUCINE ZIPPER MOTIF PROTEIN 49)	O.I.	H.G.	S.X.	Please select
0.83	94.0	0.98	Contig3018_at	Contig3018	-	-	2e+0	At4g14630	GLP9 (GERMIN-LIKE PROTEIN 9)	O.I.	H.G.	S.X.	Please select
0.80	92.5	0.98	Contig5492_at	Contig5492	-	-	1e-7	At3g44890	RPL9 (RIBOSOMAL PROTEIN L9)	O.I.	H.G.	S.X.	Please select
0.80	92.5	0.98	Contig5260_s_at	Contig5260	-	-	0	At2g29630	THIC (ThiaminC)	O.I.	H.G.	S.X.	Please select
0.57	74.9	0.98	Contig20916_at	Contig20916	-	-	3e-1	At5g66160	JR700	O.I.	H.G.	S.X.	Please select
0.53	69.7	0.97	Contig18164_at	Contig18164	-	-	1e-11	At1g20920	DEAD box RNA helicase, putative	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
7.1	98.4	GSM261046	after 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
6.4	98.1	GSM261047	after 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
6.3	98.1	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
4.8	97.0	GSM71139	OWB-D stress replicate 1	GSE3170	Barley single feature polymorphisms and drought stress gene expression
3.9	95.8	GSM71152	Barke stress and unstress replicate 3	GSE3170	Barley single feature polymorphisms and drought stress gene expression
3.8	95.7	GSM261028	ABA-Late-rep2	GSE10328	ABA experiment
3.2	94.3	GSM71141	OWB-D stress replicate 3	GSE3170	Barley single feature polymorphisms and drought stress gene expression
3.0	93.8	GSM282037	Malting_day1_Morex_rep2	GSE11200	Expression data from malting barley seeds
2.8	93.1	GSM71140	OWB-D stress replicate 2	GSE3170	Barley single feature polymorphisms and drought stress gene expression
2.8	93.1	GSM71142	OWB-R stress replicate 1	GSE3170	Barley single feature polymorphisms and drought stress gene expression

Inter-species module comparison

A co-expression module including the maize gene, Zm.2629.1.S1_at, orthologous to the query gene, Contig7652_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.53	69.1	Zm.2629.1.S1_at	At3g56660	DNA binding protein	-	1e-2	At2g40950	BZIP17	O.I.	H.G.	S.X.	Please select
0.55	71.6	Zm.4986.1.S1_x_at	At3g56660	hypothetical protein LOC100279549	-	2e-91	At3g29360	UDP-glucose 6-dehydrogenase, putative	O.I.	H.G.	S.X.	Please select
0.36	41.3	Zm.18501.1.A1_at	At3g56660	hypothetical protein LOC100191978	-	2e+1	At5g19070	-	O.I.	H.G.	S.X.	Please select
0.33	36.0	Zm.1355.1.A1_at	At3g56660	-	-	1e+0	At1g69850	ATNRT1:2 (ARABIDOPSIS THALIANA NITRATE TRANSPORTER 1:2)	O.I.	H.G.	S.X.	Please select
0.27	24.6	Zm.818.2.A1_a_at	At3g56660	hypothetical protein LOC100194015 /// hypothetical protein LOC100276527 /// hypothetical protein LOC100277252	-	1e+1	At5g67490	unknown protein	O.I.	H.G.	S.X.	Please select
0.22	16.9	Zm.14133.1.A1_at	At3g56660	gibberellin receptor GID1L2	-	7e+0	At4g03113	unknown protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Back to the CoP portal site

Back to the KAGIANA project homepage