CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Contig7652_at

Gene name
Homology with Arabidopsis Similar to At3g56660: BZIP49 (BASIC REGION/LEUCINE ZIPPER MOTIF PROTEIN 49) (HF=3e-3)

Module size 6 genes

NF 0.79

%ile 96.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.1 0.97 Contig7652_at Contig7652 - - 3e-3 At3g56660 BZIP49 (BASIC REGION/LEUCINE ZIPPER MOTIF PROTEIN 49) O.I. H.G. S.X.
0.83 94.0 0.98 Contig3018_at Contig3018 - - 2e+0 At4g14630 GLP9 (GERMIN-LIKE PROTEIN 9) O.I. H.G. S.X.
0.80 92.5 0.98 Contig5492_at Contig5492 - - 1e-7 At3g44890 RPL9 (RIBOSOMAL PROTEIN L9) O.I. H.G. S.X.
0.80 92.5 0.98 Contig5260_s_at Contig5260 - - 0 At2g29630 THIC (ThiaminC) O.I. H.G. S.X.
0.57 74.9 0.98 Contig20916_at Contig20916 - - 3e-1 At5g66160 JR700 O.I. H.G. S.X.
0.53 69.7 0.97 Contig18164_at Contig18164 - - 1e-11 At1g20920 DEAD box RNA helicase, putative O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
7.1 98.4 GSM261046 after 3 days in mannitol medium rep2 GSE10330 Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
6.4 98.1 GSM261047 after 3 days in mannitol medium rep3 GSE10330 Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
6.3 98.1 GSM261045 after 3 days in mannitol medium rep1 GSE10330 Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
4.8 97.0 GSM71139 OWB-D stress replicate 1 GSE3170 Barley single feature polymorphisms and drought stress gene expression
3.9 95.8 GSM71152 Barke stress and unstress replicate 3 GSE3170 Barley single feature polymorphisms and drought stress gene expression
3.8 95.7 GSM261028 ABA-Late-rep2 GSE10328 ABA experiment
3.2 94.3 GSM71141 OWB-D stress replicate 3 GSE3170 Barley single feature polymorphisms and drought stress gene expression
3.0 93.8 GSM282037 Malting_day1_Morex_rep2 GSE11200 Expression data from malting barley seeds
2.8 93.1 GSM71140 OWB-D stress replicate 2 GSE3170 Barley single feature polymorphisms and drought stress gene expression
2.8 93.1 GSM71142 OWB-R stress replicate 1 GSE3170 Barley single feature polymorphisms and drought stress gene expression

Inter-species module comparison

A co-expression module including the rice gene, Os05g0411300, orthologous to the query gene, Contig7652_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.72 89.8 Os05g0411300 At3g56660 - Conserved hypothetical protein 1e-3 At3g56660 BZIP49 (BASIC REGION/LEUCINE ZIPPER MOTIF PROTEIN 49) O.I. H.G. S.X.
0.61 81.2 Os03g0278300 At3g56660 - Transcriptional coactivator-like protein 6e-12 At5g02530 RNA and export factor-binding protein, putative O.I. H.G. S.X.
0.41 52.4 Os03g0280000 At3g56660 - ABC transporter, transmembrane region domaincontaining protein 2e-72 At3g55320 PGP20 (P-GLYCOPROTEIN 20) O.I. H.G. S.X.
0.40 51.1 Os03g0274000 At3g56660 - Oxysterol-binding protein family protein 1e-24 At5g02100 UNE18 (UNFERTILIZED EMBRYO SAC 18) O.I. H.G. S.X.
0.38 46.9 Os03g0756200 At3g56660 - Protein kinase domain containing protein 1e-17 At3g02130 RPK2 (RECEPTOR-LIKE PROTEIN KINASE 2) O.I. H.G. S.X.
0.36 44.0 Os01g0911100 At3g56660 - ATP-dependent RNA helicase-like protein 1e-17 At5g63120 ethylene-responsive DEAD box RNA helicase, putative (RH30) O.I. H.G. S.X.
0.36 44.0 Os02g0601800 At3g56660 - Bromodomain containing protein 3e-2 At2g22080 unknown protein O.I. H.G. S.X.
0.36 44.0 Os01g0510100 At3g56660 - MAP kinase kinase 1 5e-30 At5g56580 MKK6 (MAP KINASE KINASE 6) O.I. H.G. S.X.
0.35 41.7 Os01g0556400 At3g56660 - Heat shock protein DnaJ family protein 4e-3 At5g05750 DNAJ heat shock N-terminal domain-containing protein O.I. H.G. S.X.
0.31 34.5 Os04g0609600 At3g56660 - Protein phosphatase type 2C 3e-3 At5g27930 protein phosphatase 2C, putative / PP2C, putative O.I. H.G. S.X.
0.23 21.2 Os03g0275500 At3g56660 - Epsin, N-terminal domain containing protein 1e-3 At2g25430 epsin N-terminal homology (ENTH) domain-containing protein O.I. H.G. S.X.
0.20 16.5 Os07g0471000 At3g56660 - Protein kinase domain containing protein 6e-3 At5g24360 IRE1-1 (INOSITOL REQUIRING 1-1) O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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