CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Contig7652_at

Gene name
Homology with Arabidopsis Similar to At3g56660: BZIP49 (BASIC REGION/LEUCINE ZIPPER MOTIF PROTEIN 49) (HF=3e-3)

Module size 6 genes

NF 0.79

%ile 96.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.1 0.97 Contig7652_at Contig7652 - - 3e-3 At3g56660 BZIP49 (BASIC REGION/LEUCINE ZIPPER MOTIF PROTEIN 49) O.I. H.G. S.X.
0.83 94.0 0.98 Contig3018_at Contig3018 - - 2e+0 At4g14630 GLP9 (GERMIN-LIKE PROTEIN 9) O.I. H.G. S.X.
0.80 92.5 0.98 Contig5492_at Contig5492 - - 1e-7 At3g44890 RPL9 (RIBOSOMAL PROTEIN L9) O.I. H.G. S.X.
0.80 92.5 0.98 Contig5260_s_at Contig5260 - - 0 At2g29630 THIC (ThiaminC) O.I. H.G. S.X.
0.57 74.9 0.98 Contig20916_at Contig20916 - - 3e-1 At5g66160 JR700 O.I. H.G. S.X.
0.53 69.7 0.97 Contig18164_at Contig18164 - - 1e-11 At1g20920 DEAD box RNA helicase, putative O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
7.1 98.4 GSM261046 after 3 days in mannitol medium rep2 GSE10330 Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
6.4 98.1 GSM261047 after 3 days in mannitol medium rep3 GSE10330 Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
6.3 98.1 GSM261045 after 3 days in mannitol medium rep1 GSE10330 Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
4.8 97.0 GSM71139 OWB-D stress replicate 1 GSE3170 Barley single feature polymorphisms and drought stress gene expression
3.9 95.8 GSM71152 Barke stress and unstress replicate 3 GSE3170 Barley single feature polymorphisms and drought stress gene expression
3.8 95.7 GSM261028 ABA-Late-rep2 GSE10328 ABA experiment
3.2 94.3 GSM71141 OWB-D stress replicate 3 GSE3170 Barley single feature polymorphisms and drought stress gene expression
3.0 93.8 GSM282037 Malting_day1_Morex_rep2 GSE11200 Expression data from malting barley seeds
2.8 93.1 GSM71140 OWB-D stress replicate 2 GSE3170 Barley single feature polymorphisms and drought stress gene expression
2.8 93.1 GSM71142 OWB-R stress replicate 1 GSE3170 Barley single feature polymorphisms and drought stress gene expression

Inter-species module comparison

A co-expression module including the soybean gene, GmaAffx.8472.2.S1_at, orthologous to the query gene, Contig7652_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.86 93.0 GmaAffx.8472.2.S1_at At3g56660 - - 1e-6 At3g01300 protein kinase, putative O.I. H.G. S.X.
0.35 48.6 Gma.12088.1.S1_s_at At3g56660 - - 2e-21 At3g18210 oxidoreductase, 2OG-Fe(II) oxygenase family protein O.I. H.G. S.X.
0.23 29.9 GmaAffx.59321.1.S1_at At3g56660 - - 1e+0 At2g30990 unknown protein O.I. H.G. S.X.
0.22 28.1 GmaAffx.63439.1.S1_at At3g56660 - - 3e-34 At1g01510 AN (ANGUSTIFOLIA) O.I. H.G. S.X.
0.09 12.0 Gma.3704.1.S1_a_at At3g56660 - - 4e-2 At1g51510 Y14 O.I. H.G. S.X.
0.06 9.0 Gma.8344.1.S1_a_at At3g56660 - - 4e-5 At1g77800 PHD finger family protein O.I. H.G. S.X.
0.06 9.0 Gma.3809.1.S1_at At3g56660 - - 1e-56 At1g03150 GCN5-related N-acetyltransferase (GNAT) family protein O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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