Co-expression analysis

Gene ID	Contig7620_at
Gene name
Homology with Arabidopsis	Similar to At2g01060: myb family transcription factor (HF=1e-11)
Module size	16 genes
NF	0.56
%ile	78.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	84.7	0.94	Contig7620_at	Contig7620	-	-	1e-11	At2g01060	myb family transcription factor	O.I.	H.G.	S.X.	Please select
0.71	87.1	0.97	Contig4302_at	Contig4302	-	-	8e-2	At5g48640	cyclin family protein	O.I.	H.G.	S.X.	Please select
0.64	80.9	0.96	Contig5248_s_at	Contig5248	-	-	4e+0	At5g34882	-	O.I.	H.G.	S.X.	Please select
0.62	79.1	0.96	Contig4880_x_at	Contig4880	-	-	2e-20	At1g61800	GPT2	O.I.	H.G.	S.X.	Please select
0.61	78.7	0.97	Contig2826_s_at	Contig2826	-	-	1e-21	At3g44110	ATJ3	O.I.	H.G.	S.X.	Please select
0.61	78.7	0.97	Contig3794_at	Contig3794	-	-	7e-31	At1g16890	ubiquitin-conjugating enzyme, putative	O.I.	H.G.	S.X.	Please select
0.61	78.7	0.97	Contig5778_at	Contig5778	-	-	2e-10	At4g22260	IM (IMMUTANS)	O.I.	H.G.	S.X.	Please select
0.60	77.3	0.97	Contig5724_at	Contig5724	-	-	4e-12	At1g06570	PDS1 (PHYTOENE DESATURATION 1)	O.I.	H.G.	S.X.	Please select
0.57	74.9	0.96	Contig5246_s_at	Contig5246	-	-	3e-13	At1g22450	COX6B (CYTOCHROME C OXIDASE 6B)	O.I.	H.G.	S.X.	Please select
0.54	70.3	0.97	Contig4563_at	Contig4563	-	-	5e-15	At3g17240	mtLPD2 (LIPOAMIDE DEHYDROGENASE 2)	O.I.	H.G.	S.X.	Please select
0.53	69.7	0.97	Contig6203_at	Contig6203	-	-	1e-3	At1g70110	lectin protein kinase family protein	O.I.	H.G.	S.X.	Please select
0.51	67.5	0.96	Contig2986_at	Contig2986	-	-	1e-39	At3g28710	H+-transporting two-sector ATPase, putative	O.I.	H.G.	S.X.	Please select
0.48	63.2	0.97	Contig3118_at	Contig3118	-	-	3e-68	At3g27240	cytochrome c1, putative	O.I.	H.G.	S.X.	Please select
0.47	62.2	0.97	Contig3878_at	Contig3878	-	-	9e-6	At5g59890	ADF4 (ACTIN DEPOLYMERIZING FACTOR 4)	O.I.	H.G.	S.X.	Please select
0.44	58.9	0.96	Contig3263_at	Contig3263	-	-	9e-38	At4g20360	ATRABE1B (ARABIDOPSIS RAB GTPASE HOMOLOG E1B)	O.I.	H.G.	S.X.	Please select
0.37	47.9	0.96	Contig4296_at	Contig4296	-	-	5e-38	At1g21720	PBC1 (PROTEASOME BETA SUBUNIT C1)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.0	96.0	GSM146367	Maythorpe Root Salt, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
3.7	95.5	GSM146361	Golden Promise Root Salt, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
2.9	93.4	GSM146366	Maythorpe Root Salt, biological rep 1	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
2.7	92.7	GSM215731	gibberellin treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
2.4	91.4	GSM146360	Golden Promise Root Salt, biological rep 1	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
2.4	91.4	GSM261070	Albina f-17 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
2.2	90.3	GSM238426	Endosperm 72 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
2.2	90.3	GSM282037	Malting_day1_Morex_rep2	GSE11200	Expression data from malting barley seeds
2.2	90.3	GSM261064	Xantha s-46 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
2.2	90.3	GSM146358	Golden Promise Root Control, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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