Co-expression analysis

Gene ID	Contig7618_at
Gene name
Homology with Arabidopsis	Similar to At1g15120: ubiquinol-cytochrome C reductase complex 7.8 kDa protein, putative / mitochondrial hinge protein, putative (HF=3e-10)
Module size	6 genes
NF	0.56
%ile	78.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.44	58.9	0.85	Contig7618_at	Contig7618	-	-	3e-10	At1g15120	ubiquinol-cytochrome C reductase complex 7.8 kDa protein, putative / mitochondrial hinge protein, putative	O.I.	H.G.	S.X.	Please select
0.80	92.5	0.86	Contig8289_s_at	Contig8289	-	-	1e-3	At2g30880	pleckstrin homology (PH) domain-containing protein	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.89	Contig2688_s_at	Contig2688	-	-	1e-59	At5g08530	CI51 (51 kDa subunit of complex I)	O.I.	H.G.	S.X.	Please select
0.60	77.3	0.88	HVSMEf0019H18r2_at	HVSMEf0019H18r2	-	-	1e-2	At3g26520	TIP2 (TONOPLAST INTRINSIC PROTEIN 2)	O.I.	H.G.	S.X.	Please select
0.46	61.0	0.88	Contig5837_at	Contig5837	-	-	1e-34	At1g15750	TPL (TOPLESS)	O.I.	H.G.	S.X.	Please select
0.29	35.5	0.89	HVSMEg0017L02r2_at	HVSMEg0017L02r2	-	-	4e+0	At4g17670	senescence-associated protein-related	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
18.7	99.7	GSM238418	Endosperm 25DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
12.7	99.4	GSM238419	Endosperm 25DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
5.4	97.5	GSM431546	pathogen isolates: Mock - rep1	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
5.3	97.4	GSM431550	pathogen isolates: Polymyxa graminis - rep2	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
4.7	96.9	GSM440979	Stressed seed_Rep2	GSE17669	Gene expression in the barley spike during drought stress
4.6	96.8	GSM282031	Malting_day1_Harrington_rep1	GSE11200	Expression data from malting barley seeds
4.6	96.8	GSM431547	pathogen isolates: Mock - rep2	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
4.6	96.8	GSM215727	Control (DMSO) treatment rep1	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
4.4	96.6	GSM238416	Endosperm 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.6	95.3	GSM431549	pathogen isolates: Polymyxa graminis - rep1	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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