Co-expression analysis

Gene ID	Contig7593_at
Gene name
Homology with Arabidopsis	Similar to At3g61070: PEX11E (HF=6e-7)
Module size	10 genes
NF	0.82
%ile	97.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.76	89.8	0.94	Contig7593_at	Contig7593	-	-	6e-7	At3g61070	PEX11E	O.I.	H.G.	S.X.	Please select
0.90	95.7	0.95	Contig14821_at	Contig14821	-	-	4e-2	At2g27130	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	O.I.	H.G.	S.X.	Please select
0.89	95.4	0.96	Contig5185_at	Contig5185	-	-	2e+0	At2g41480	electron carrier/ heme binding / peroxidase	O.I.	H.G.	S.X.	Please select
0.86	94.8	0.95	Contig7103_s_at	Contig7103	-	-	3e-16	At3g21430	-	O.I.	H.G.	S.X.	Please select
0.84	94.3	0.95	Contig828_s_at	Contig828	-	-	1e-26	At2g34430	LHB1B1	O.I.	H.G.	S.X.	Please select
0.84	94.3	0.96	Contig15036_at	Contig15036	-	-	1e-1	At3g07090	unknown protein	O.I.	H.G.	S.X.	Please select
0.82	93.1	0.96	Contig9378_at	Contig9378	-	-	6e-10	At3g16100	ATRABG3C (ARABIDOPSIS RAB GTPASE HOMOLOG G3C)	O.I.	H.G.	S.X.	Please select
0.78	91.2	0.97	HU14M07u_s_at	HU14M07u	-	-	1e+0	At5g65050	AGL31 (AGAMOUS LIKE MADS-BOX PROTEIN 31)	O.I.	H.G.	S.X.	Please select
0.64	80.9	0.95	Contig6595_at	Contig6595	-	-	2e+0	At1g12440	zinc finger (AN1-like) family protein	O.I.	H.G.	S.X.	Please select
0.59	75.8	0.95	Contig10203_at	Contig10203	-	-	2e+0	At1g17190	ATGSTU26 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 26)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.1	97.3	GSM440978	Stressed seed_Rep1	GSE17669	Gene expression in the barley spike during drought stress
5.0	97.2	GSM261070	Albina f-17 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.6	96.8	GSM238417	Endosperm 16DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.5	96.7	GSM419982	Seed_Rep2	GSE16754	Comparative transcriptional profiling of organs of the barley spike
4.5	96.7	GSM440976	Control seed_Rep2	GSE17669	Gene expression in the barley spike during drought stress
4.4	96.6	GSM440980	Stressed seed_Rep3	GSE17669	Gene expression in the barley spike during drought stress
4.4	96.6	GSM238419	Endosperm 25DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.3	96.4	GSM261074	Albina e-16 Control rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.2	96.3	GSM440979	Stressed seed_Rep2	GSE17669	Gene expression in the barley spike during drought stress
4.2	96.3	GSM261069	Albina f-17 Control rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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