Co-expression analysis

Gene ID Contig7589_s_at
Gene name
Homology with ArabidopsisSimilar to At2g14835: zinc finger (C3HC4-type RING finger) family protein (HF=1e-2)
Module size 6 genes
NF 0.28
%ile 35.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7790.80.94Contig7589_s_atContig7589--1e-2At2g14835zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.4661.00.95Contig10375_atContig10375--5e-7At3g08950electron transport SCO1/SenC family proteinO.I.H.G.S.X.
0.3545.10.94Contig4157_s_atContig4157--1e-25At1g60780HAP13 (HAPLESS 13)O.I.H.G.S.X.
0.3138.60.94Contig4967_atContig4967--5e-13At1g75440UBC16 (ubiquitin-conjugating enzyme 16)O.I.H.G.S.X.
0.1818.20.94Contig10274_atContig10274--5e+0At5g23030TET12 (TETRASPANIN12)O.I.H.G.S.X.
0.1311.60.94Contig4745_atContig4745--2e+0At5g37520unknown proteinO.I.H.G.S.X.

VF%ileCCGene IDRepr. IDGene nameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.5066.90.93HW05J06u_atHW05J06u--4e+0At5g12340unknown proteinO.I.H.G.S.X.
0.4356.40.88Contig6362_s_atContig6362--3e-1At1g35340ATP-dependent protease La (LON) domain-containing proteinO.I.H.G.S.X.
0.4356.40.92Contig3800_s_atContig3800--3e-27At1g69840band 7 family proteinO.I.H.G.S.X.
0.4053.10.91Contig20594_atContig20594--1e+0At2g30620histone H1.2O.I.H.G.S.X.
0.4053.10.94Contig3801_atContig3801--4e-26At1g69840band 7 family proteinO.I.H.G.S.X.
0.3647.10.90Contig16044_atContig16044--2e+0At4g16444unknown proteinO.I.H.G.S.X.
0.3545.10.90Contig6135_atContig6135--4e-1At5g16150PGLCT (PLASTIDIC GLC TRANSLOCATOR)O.I.H.G.S.X.
0.3342.60.91Contig25720_atContig25720--4e+0At4g34970ADF9 (ACTIN DEPOLYMERIZING FACTOR 9)O.I.H.G.S.X.
0.3342.60.92Contig418_atContig418--4e-29At2g34430LHB1B1O.I.H.G.S.X.
0.3240.30.91Contig19278_atContig19278--1e-3At2g47890zinc finger (B-box type) family proteinO.I.H.G.S.X.
0.3240.30.93Contig2173_s_atContig2173--8e-6At1g20693HMGB2 (HIGH MOBILITY GROUP B 2)O.I.H.G.S.X.
0.3138.60.91Contig7416_atContig7416--2e-4At5g60910AGL8 (agamous-like 8)O.I.H.G.S.X.
0.3138.60.93Contig17249_atContig17249--3e-1At2g05520GRP-3 (GLYCINE-RICH PROTEIN 3)O.I.H.G.S.X.
0.3138.60.93Contig3802_atContig3802--3e-76At5g11770NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrialO.I.H.G.S.X.
0.3037.00.90HVSMEk0007B15r2_s_atHVSMEk0007B15r2--4e-1At1g26630FBR12 (FUMONISIN B1-RESISTANT12)O.I.H.G.S.X.
0.2935.50.90Contig2551_s_atContig2551--3e-10At3g52990pyruvate kinase, putativeO.I.H.G.S.X.
0.2935.50.90Contig8385_atContig8385--5e-2At3g56740ubiquitin-associated (UBA)/TS-N domain-containing proteinO.I.H.G.S.X.
0.2935.50.92Contig11933_atContig11933--4e-1At3g13110ATSERAT2O.I.H.G.S.X.
0.2935.50.93Contig5538_atContig5538--1e-24At1g30470SIT4 phosphatase-associated family proteinO.I.H.G.S.X.
0.2732.10.91Contig9832_s_atContig9832--2e-7At5g45170CbbY protein-relatedO.I.H.G.S.X.
0.2732.10.91Contig11951_atContig11951--7e-4At5g15550transducin family protein / WD-40 repeat family proteinO.I.H.G.S.X.
0.2630.40.92Contig9178_atContig9178--9e-6At3g26125CYP86C2O.I.H.G.S.X.
0.2528.90.87Contig19398_atContig19398--4e-7At1g09530PIF3 (PHYTOCHROME INTERACTING FACTOR 3)O.I.H.G.S.X.


Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
9.599.0GSM261046after 3 days in mannitol medium rep2GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
8.498.8GSM261045after 3 days in mannitol medium rep1GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
7.798.6GSM261047after 3 days in mannitol medium rep3GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
5.297.4GSM382234Root_Hg3GSE15295Mercury toxicity in barley rootsLink to GEO
4.096.0GSM215732gibberellin plus Yariv-reagent treatment rep2GSE8712The effects of Yariv-reagent on barley aleurone GA signalingLink to GEO
3.595.1GSM282041Control_dryseed_Morex_rep2GSE11200Expression data from malting barley seedsLink to GEO
3.093.8GSM215729gibberellin plus Yariv-reagent treatment rep1GSE8712The effects of Yariv-reagent on barley aleurone GA signalingLink to GEO
3.093.8GSM215730Control (DMSO) treatment rep2GSE8712The effects of Yariv-reagent on barley aleurone GA signalingLink to GEO
2.591.9GSM215727Control (DMSO) treatment rep1GSE8712The effects of Yariv-reagent on barley aleurone GA signalingLink to GEO
2.491.4GSM382233Root_Hg2GSE15295Mercury toxicity in barley rootsLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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