Co-expression analysis

Gene ID Contig7589_s_at
Gene name
Homology with ArabidopsisSimilar to At2g14835: zinc finger (C3HC4-type RING finger) family protein (HF=1e-2)
Module size 6 genes
NF 0.28
%ile 35.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7790.80.94Contig7589_s_atContig7589--1e-2At2g14835zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.4661.00.95Contig10375_atContig10375--5e-7At3g08950electron transport SCO1/SenC family proteinO.I.H.G.S.X.
0.3545.10.94Contig4157_s_atContig4157--1e-25At1g60780HAP13 (HAPLESS 13)O.I.H.G.S.X.
0.3138.60.94Contig4967_atContig4967--5e-13At1g75440UBC16 (ubiquitin-conjugating enzyme 16)O.I.H.G.S.X.
0.1818.20.94Contig10274_atContig10274--5e+0At5g23030TET12 (TETRASPANIN12)O.I.H.G.S.X.
0.1311.60.94Contig4745_atContig4745--2e+0At5g37520unknown proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
9.599.0GSM261046after 3 days in mannitol medium rep2GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
8.498.8GSM261045after 3 days in mannitol medium rep1GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
7.798.6GSM261047after 3 days in mannitol medium rep3GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
5.297.4GSM382234Root_Hg3GSE15295Mercury toxicity in barley rootsLink to GEO
4.096.0GSM215732gibberellin plus Yariv-reagent treatment rep2GSE8712The effects of Yariv-reagent on barley aleurone GA signalingLink to GEO
3.595.1GSM282041Control_dryseed_Morex_rep2GSE11200Expression data from malting barley seedsLink to GEO
3.093.8GSM215729gibberellin plus Yariv-reagent treatment rep1GSE8712The effects of Yariv-reagent on barley aleurone GA signalingLink to GEO
3.093.8GSM215730Control (DMSO) treatment rep2GSE8712The effects of Yariv-reagent on barley aleurone GA signalingLink to GEO
2.591.9GSM215727Control (DMSO) treatment rep1GSE8712The effects of Yariv-reagent on barley aleurone GA signalingLink to GEO
2.491.4GSM382233Root_Hg2GSE15295Mercury toxicity in barley rootsLink to GEO

Inter-species module comparison

A co-expression module including the wheat gene, Ta.14811.2.A1_at, orthologous to the query gene, Contig7589_s_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.9094.8Ta.14811.2.A1_atAt2g14835--2e+0At2g33400unknown proteinO.I.H.G.S.X.
0.6081.0Ta.6642.3.S1_atAt2g14835--1e-12At5g42080ADL1 (ARABIDOPSIS DYNAMIN-LIKE PROTEIN)O.I.H.G.S.X.
0.5475.5Ta.21374.1.S1_x_atAt2g14835--5e-38At5g58290RPT3 (REGULATORY PARTICLE TRIPLE-A ATPASE 3)O.I.H.G.S.X.
0.5273.7Ta.20762.2.S1_a_atAt2g14835--4e-8At2g20580RPN1A (26S PROTEASOME REGULATORY SUBUNIT S2 1A)O.I.H.G.S.X.
0.4969.7Ta.14393.1.S1_atAt2g14835--8e-35At2g27020PAG1O.I.H.G.S.X.
0.4260.9Ta.10624.1.S1_atAt2g14835--5e-4At2g47960unknown proteinO.I.H.G.S.X.
0.4260.9Ta.9553.1.S1_atAt2g14835--8e+0At3g46430unknown proteinO.I.H.G.S.X.
0.4058.4Ta.7317.1.S1_atAt2g14835--1e-20At2g15240UNC-50 family proteinO.I.H.G.S.X.
0.3956.1Ta.21374.1.S1_atAt2g14835--5e-38At5g58290RPT3 (REGULATORY PARTICLE TRIPLE-A ATPASE 3)O.I.H.G.S.X.
0.3651.9Ta.23012.1.S1_atAt2g14835--7e-20At1g20200EMB2719 (EMBRYO DEFECTIVE 2719)O.I.H.G.S.X.
0.3651.9Ta.14021.1.S1_atAt2g14835--6e-26At3g27430PBB1O.I.H.G.S.X.
0.3651.9Ta.8245.1.S1_atAt2g14835--2e-35At1g0481026S proteasome regulatory subunit, putativeO.I.H.G.S.X.
0.3549.8Ta.14415.1.S1_atAt2g1483520S proteasome beta 7 subunit-4e-3At1g56450PBG1O.I.H.G.S.X.
0.3448.1Ta.1866.3.S1_atAt2g14835--4e-3At1g12920ERF1-2 (EUKARYOTIC RELEASE FACTOR 1-2)O.I.H.G.S.X.
0.3448.1Ta.6566.1.S1_atAt2g14835--3e-71At2g2014026S protease regulatory complex subunit 4, putativeO.I.H.G.S.X.
0.3346.9Ta.23445.1.S1_atAt2g14835--1e+0At3g25150nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing proteinO.I.H.G.S.X.
0.2839.2Ta.1998.2.S1_a_atAt2g14835--2e-53At1g25490RCN1 (ROOTS CURL IN NPA)O.I.H.G.S.X.
0.2839.2Ta.7274.1.A1_x_atAt2g14835--7e-5At1g79650RAD23O.I.H.G.S.X.
0.2839.2Ta.1900.1.S1_atAt2g14835--2e-23At1g29150ATS9 (ARABIDOPSIS NON-ATPASE SUBUNIT 9)O.I.H.G.S.X.
0.2633.6TaAffx.131737.1.A1_atAt2g14835--6e-1At4g31810enoyl-CoA hydratase/isomerase family proteinO.I.H.G.S.X.
0.2532.1Ta.18260.1.S1_atAt2g14835--2e-1At5g53620unknown proteinO.I.H.G.S.X.
0.2329.0Ta.6642.2.S1_atAt2g14835--4e+0At5g64342CPuORF39 (Conserved peptide upstream open reading frame 39)O.I.H.G.S.X.
0.2329.0TaAffx.52682.1.S1_s_atAt2g14835eIF-2 beta subunit-3e-4At5g20920EIF2 BETAO.I.H.G.S.X.
0.2329.0Ta.18.2.S1_x_atAt2g14835--9e-149At1g54270EIF4A-2O.I.H.G.S.X.
0.2125.5Ta.27272.1.S1_atAt2g14835--3e-10At3g58560endonuclease/exonuclease/phosphatase family proteinO.I.H.G.S.X.
0.2024.0Ta.12037.1.S1_atAt2g14835--2e-21At1g31780-O.I.H.G.S.X.
0.1922.4Ta.22845.1.S1_atAt2g14835tat binding protein-7e-54At1g09100RPT5B (26S proteasome AAA-ATPase subunit RPT5B)O.I.H.G.S.X.
0.1719.8Ta.14560.1.S1_atAt2g14835--2e-40At5g63400ADK1 (ADENYLATE KINASE 1)O.I.H.G.S.X.
0.1415.8Ta.1519.2.S1_atAt2g14835--5e-68At4g1432060S ribosomal protein L36a/L44 (RPL36aB)O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays



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