Co-expression analysis

Gene ID Contig7589_s_at
Gene name
Homology with ArabidopsisSimilar to At2g14835: zinc finger (C3HC4-type RING finger) family protein (HF=1e-2)
Module size 6 genes
NF 0.28
%ile 35.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7790.80.94Contig7589_s_atContig7589--1e-2At2g14835zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.4661.00.95Contig10375_atContig10375--5e-7At3g08950electron transport SCO1/SenC family proteinO.I.H.G.S.X.
0.3545.10.94Contig4157_s_atContig4157--1e-25At1g60780HAP13 (HAPLESS 13)O.I.H.G.S.X.
0.3138.60.94Contig4967_atContig4967--5e-13At1g75440UBC16 (ubiquitin-conjugating enzyme 16)O.I.H.G.S.X.
0.1818.20.94Contig10274_atContig10274--5e+0At5g23030TET12 (TETRASPANIN12)O.I.H.G.S.X.
0.1311.60.94Contig4745_atContig4745--2e+0At5g37520unknown proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
9.599.0GSM261046after 3 days in mannitol medium rep2GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
8.498.8GSM261045after 3 days in mannitol medium rep1GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
7.798.6GSM261047after 3 days in mannitol medium rep3GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
5.297.4GSM382234Root_Hg3GSE15295Mercury toxicity in barley rootsLink to GEO
4.096.0GSM215732gibberellin plus Yariv-reagent treatment rep2GSE8712The effects of Yariv-reagent on barley aleurone GA signalingLink to GEO
3.595.1GSM282041Control_dryseed_Morex_rep2GSE11200Expression data from malting barley seedsLink to GEO
3.093.8GSM215729gibberellin plus Yariv-reagent treatment rep1GSE8712The effects of Yariv-reagent on barley aleurone GA signalingLink to GEO
3.093.8GSM215730Control (DMSO) treatment rep2GSE8712The effects of Yariv-reagent on barley aleurone GA signalingLink to GEO
2.591.9GSM215727Control (DMSO) treatment rep1GSE8712The effects of Yariv-reagent on barley aleurone GA signalingLink to GEO
2.491.4GSM382233Root_Hg2GSE15295Mercury toxicity in barley rootsLink to GEO

Inter-species module comparison

A co-expression module including the rice gene, Os10g0346200, orthologous to the query gene, Contig7589_s_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.9599.6Os10g0346200At2g14835-Zn-finger, RING domain containing protein6e-11At2g14835zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.5777.0Os09g0408000At2g14835-Conserved hypothetical protein2e-11At3g50590nucleotide bindingO.I.H.G.S.X.
0.5471.9Os01g0653800At2g14835-WD40-like domain containing protein1e-32At5g24710-O.I.H.G.S.X.
0.4762.3Os03g0711400At2g14835-Coatomer alpha subunit4e-79At1g62020coatomer protein complex, subunit alpha, putativeO.I.H.G.S.X.
0.4458.1Os04g0599900At2g14835-ENTH1 protein (Fragment)2e-5At5g11710epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-relatedO.I.H.G.S.X.
0.4253.9Os07g0564700At2g14835-Hypothetical protein5e-18At3g43300ATMIN7 (ARABIDOPSIS THALIANA HOPM INTERACTOR 7)O.I.H.G.S.X.
0.4051.1Os12g0238100At2g14835-Exocyst complex component Sec10 family protein6e-40At5g12370SEC10 (EXOCYST COMPLEX COMPONENT SEC10)O.I.H.G.S.X.
0.3948.3Os03g0669200At2g14835-G protein beta subunit1e+0At2g05270unknown proteinO.I.H.G.S.X.
0.3948.3Os05g0178400At2g14835-Protein phosphatase 2A B'kappa subunit3e-4At3g09880ATB' BETAO.I.H.G.S.X.
0.3541.7Os03g0265700At2g14835-SH3 domain containing protein6e-50At2g07360SH3 domain-containing proteinO.I.H.G.S.X.
0.3541.7Os08g0520300At2g14835-RNA-binding region RNP-1 (RNA recognition motif)domain containing protein1e-9At1g17370UBP1B (oligouridylate binding protein 1B)O.I.H.G.S.X.
0.3541.7Os04g0555500At2g14835-The start codon is not identified.4e-3At2g45540WD-40 repeat family protein / beige-relatedO.I.H.G.S.X.
0.3541.7Os09g0249700At2g14835-Protein phosphatase 2A A subunit (Phosphatase 2Aregulatory A subunit)3e-87At3g25800PP2AA2 (PROTEIN PHOSPHATASE 2A SUBUNIT A2)O.I.H.G.S.X.
0.3440.0Os05g0154700At2g14835-Kinesin heavy chain (Fragment)5e-18At3g16630KINESIN-13AO.I.H.G.S.X.
0.3338.8Os06g0671900At2g14835-Beta-tubulin0At5g62690TUB2O.I.H.G.S.X.
0.3236.3Os09g0375100At2g14835-Heat shock factor-binding protein 17e-1At5g61270PIF7 (PHYTOCHROME-INTERACTING FACTOR7)O.I.H.G.S.X.
0.3236.3Os02g0461900At2g14835-Hypothetical protein3e-4At4g14905kelch repeat-containing F-box family proteinO.I.H.G.S.X.
0.3032.7Os02g0208900At2g14835-ZIGA2 protein (Fragment)6e-3At4g32630ARF GTPase activator/ zinc ion bindingO.I.H.G.S.X.
0.2831.1Os03g0227000At2g14835-Coatomer gamma subunit (Gamma-coat protein)(Gamma-COP)1e-25At4g34450coatomer gamma-2 subunit, putative / gamma-2 coat protein, putative / gamma-2 COP, putativeO.I.H.G.S.X.
0.2625.6Os08g0162000At2g14835-Nonaspanin (TM9SF) family protein9e-35At2g01970endomembrane protein 70, putativeO.I.H.G.S.X.
0.2625.6Os03g0737800At2g14835--2e-21At4g02030-O.I.H.G.S.X.
0.2524.1Os01g0273300At2g14835-BSD domain containing protein4e-3At3g11100transcription factorO.I.H.G.S.X.
0.2524.1Os06g0128200At2g14835-LMBR1-like conserved region domain containingprotein6e-55At5g01460LMBR1 integral membrane family proteinO.I.H.G.S.X.
0.2422.4Os03g0711200At2g14835-Phosphatidylinositol 4-kinase alpha (Fragment)2e-11At1g51040phosphatidylinositol 4-kinase, putativeO.I.H.G.S.X.
0.2219.4Os01g0936100At2g14835-Serine/threonine-protein kinase PBS1 (EC 2.7.1.37)(AvrPphB susceptible protein 1)7e-30At5g13160PBS1 (avrPphB susceptible 1)O.I.H.G.S.X.
0.2117.9Os05g0556100At2g14835-SDL5A1e-43At3g61760ADL1B (ARABIDOPSIS DYNAMIN-LIKE 1B)O.I.H.G.S.X.
0.1915.1Os01g0283100At2g14835-Ferripyochelin-binding protein-like1e-35At1g19580GAMMA CA1 (GAMMA CARBONIC ANHYDRASE 1)O.I.H.G.S.X.
0.1915.1Os02g0135800At2g14835-Sec13-like protein (Fragment)6e-11At2g30050transducin family protein / WD-40 repeat family proteinO.I.H.G.S.X.
0.1813.7Os02g0462900At2g14835-Prefoldin beta-like family protein9e-2At2g07340prefoldin-related KE2 family proteinO.I.H.G.S.X.
0.1712.6Os02g0690700At2g14835-Clathrin adaptor complex, medium chain familyprotein3e+0At1g19770ATPUP14O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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