Co-expression analysis

Gene ID Contig7589_at
Gene name
Homology with ArabidopsisSimilar to At2g14835: zinc finger (C3HC4-type RING finger) family protein (HF=1e-2)
Module size 6 genes
NF 0.20
%ile 23.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6077.30.94Contig7589_atContig7589--1e-2At2g14835zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.3647.10.94Contig9095_atContig9095--2e+0At1g29380-O.I.H.G.S.X.
0.2224.20.94Contig5645_atContig5645--6e-1At1g20350ATTIM17-1O.I.H.G.S.X.
0.1818.20.94Contig6293_atContig6293--5e-4At1g77370glutaredoxin, putativeO.I.H.G.S.X.
0.1818.20.94Contig9853_atContig9853--3e+0At5g12140ATCYS1 (A. thaliana cystatin-1)O.I.H.G.S.X.
0.086.50.94Contig8565_atContig8565--7e-10At3g13224RNA recognition motif (RRM)-containing proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.595.1GSM238410Pericarp 8DAF; seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.194.1GSM238408Pericarp 4DAF; seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
2.692.3GSM238411Pericarp 8DAF; seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
2.491.4GSM160744drought control rep2GSE6990Barley drought stressLink to GEO
2.390.9GSM419976Palea_Rep2GSE16754Comparative transcriptional profiling of organs of the barley spikeLink to GEO
2.390.9GSM440964Control palea_Rep2GSE17669Gene expression in the barley spike during drought stressLink to GEO
2.390.9GSM238412Endosperm 4DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
2.390.9GSM440960Stressed lemma_Rep1GSE17669Gene expression in the barley spike during drought stressLink to GEO
2.390.9GSM1611487% SWC rep3GSE6990Barley drought stressLink to GEO
2.390.9GSM238409Pericarp 4DAF; seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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