Co-expression analysis

Gene ID	Contig7579_at
Gene name
Homology with Arabidopsis	Similar to At3g03940: protein kinase family protein (HF=1e-57)
Module size	29 genes
NF	0.79
%ile	96.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.81	92.8	0.95	Contig7579_at	Contig7579	-	-	1e-57	At3g03940	protein kinase family protein	O.I.	H.G.	S.X.	Please select
0.90	95.7	0.95	Contig5587_at	Contig5587	-	-	8e-1	At2g30130	ASL5	O.I.	H.G.	S.X.	Please select
0.88	95.2	0.96	Contig10093_s_at	Contig10093	-	-	2e-3	At1g74970	RPS9 (RIBOSOMAL PROTEIN S9)	O.I.	H.G.	S.X.	Please select
0.86	94.8	0.96	Contig10358_at	Contig10358	-	-	8e-1	At5g67580	TRB2	O.I.	H.G.	S.X.	Please select
0.83	94.0	0.94	Contig6677_s_at	Contig6677	-	-	1e-1	At5g17510	unknown protein	O.I.	H.G.	S.X.	Please select
0.83	94.0	0.96	HVSMEa0009A11r2_at	HVSMEa0009A11r2	-	-	1e-2	At4g32530	vacuolar ATP synthase, putative / V-ATPase, putative	O.I.	H.G.	S.X.	Please select
0.83	94.0	0.95	Contig4386_at	Contig4386	-	-	5e-2	At5g50470	NF-YC7 (NUCLEAR FACTOR Y, SUBUNIT C7)	O.I.	H.G.	S.X.	Please select
0.83	94.0	0.96	Contig6938_at	Contig6938	-	-	1e+0	At1g45145	ATTRX5	O.I.	H.G.	S.X.	Please select
0.83	94.0	0.97	Contig4217_at	Contig4217	-	-	3e-71	At5g03290	isocitrate dehydrogenase, putative / NAD+ isocitrate dehydrogenase, putative	O.I.	H.G.	S.X.	Please select
0.82	93.1	0.94	Contig10142_at	Contig10142	-	-	1e-1	At1g12665	-	O.I.	H.G.	S.X.	Please select
0.82	93.1	0.95	Contig5684_at	Contig5684	-	-	2e+0	At5g49940	NFU2 (NIFU-LIKE PROTEIN 2)	O.I.	H.G.	S.X.	Please select
0.81	92.8	0.96	Contig3663_at	Contig3663	-	-	2e+0	At3g04640	glycine-rich protein	O.I.	H.G.	S.X.	Please select
0.81	92.8	0.95	Contig5527_at	Contig5527	-	-	2e-4	At3g16910	AAE7 (ACYL-ACTIVATING ENZYME 7)	O.I.	H.G.	S.X.	Please select
0.80	92.5	0.94	Contig10093_at	Contig10093	-	-	2e-3	At1g74970	RPS9 (RIBOSOMAL PROTEIN S9)	O.I.	H.G.	S.X.	Please select
0.79	91.4	0.95	Contig5105_at	Contig5105	-	-	8e-9	At3g26060	ATPRX Q	O.I.	H.G.	S.X.	Please select
0.79	91.4	0.95	Contig8125_at	Contig8125	-	-	4e-1	At5g11930	glutaredoxin family protein	O.I.	H.G.	S.X.	Please select
0.79	91.4	0.96	Contig4444_at	Contig4444	-	-	3e-3	At2g40960	nucleic acid binding	O.I.	H.G.	S.X.	Please select
0.78	91.2	0.94	Contig5009_at	Contig5009	-	-	9e-18	At5g59890	ADF4 (ACTIN DEPOLYMERIZING FACTOR 4)	O.I.	H.G.	S.X.	Please select
0.76	89.8	0.95	Contig8084_at	Contig8084	-	-	1e-7	At1g32990	PRPL11 (PLASTID RIBOSOMAL PROTEIN L11)	O.I.	H.G.	S.X.	Please select
0.76	89.8	0.95	Contig13273_at	Contig13273	-	-	7e-19	At1g55270	kelch repeat-containing F-box family protein	O.I.	H.G.	S.X.	Please select
0.75	89.5	0.95	Contig5496_at	Contig5496	-	-	3e-3	At3g44190	pyridine nucleotide-disulphide oxidoreductase family protein	O.I.	H.G.	S.X.	Please select
0.75	89.5	0.95	Contig6150_at	Contig6150	-	-	3e-2	At3g56290	unknown protein	O.I.	H.G.	S.X.	Please select
0.75	89.5	0.95	Contig5776_s_at	Contig5776	-	-	3e-1	At1g24735	O-methyltransferase	O.I.	H.G.	S.X.	Please select
0.72	87.4	0.95	Contig8956_at	Contig8956	-	-	7e-3	At1g64900	CYP89A2 (CYTOCHROME P450 89A2)	O.I.	H.G.	S.X.	Please select
0.70	86.0	0.96	Contig9440_s_at	Contig9440	-	-	4e-4	At3g18760	ribosomal protein S6 family protein	O.I.	H.G.	S.X.	Please select
0.69	85.5	0.95	Contig6819_at	Contig6819	-	-	8e-13	At5g05820	phosphate translocator-related	O.I.	H.G.	S.X.	Please select
0.68	85.1	0.95	Contig106_x_at	Contig106	-	-	4e-16	At4g40040	histone H3.2	O.I.	H.G.	S.X.	Please select
0.68	85.1	0.96	Contig570_s_at	Contig570	-	-	3e-23	At1g09200	histone H3	O.I.	H.G.	S.X.	Please select
0.58	74.9	0.95	HVSMEn0024L14r2_at	HVSMEn0024L14r2	-	-	6e-1	At3g04170	germin-like protein, putative	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.8	95.7	GSM261022	ABA-Control-rep2	GSE10328	ABA experiment
3.6	95.3	GSM238415	Endosperm 8DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.0	93.8	GSM261021	ABA-Control-rep1	GSE10328	ABA experiment
3.0	93.8	GSM261073	Albina f-17 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
2.9	93.4	GSM261032	Dicktoo control-rep3	GSE10329	Low temperature stress in cv. Dicktoo
2.7	92.7	GSM419982	Seed_Rep2	GSE16754	Comparative transcriptional profiling of organs of the barley spike
2.7	92.7	GSM440976	Control seed_Rep2	GSE17669	Gene expression in the barley spike during drought stress
2.7	92.7	GSM261072	Albina f-17 Hardened rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
2.7	92.7	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
2.7	92.7	GSM440974	Stressed awn_Rep3	GSE17669	Gene expression in the barley spike during drought stress

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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