Co-expression analysis

Gene ID	Contig7570_at
Gene name
Homology with Arabidopsis	Similar to At1g06960: small nuclear ribonucleoprotein U2B, putative / spliceosomal protein, putative (HF=1e-7)
Module size	8 genes
NF	0.54
%ile	75.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.61	78.7	0.96	Contig7570_at	Contig7570	-	-	1e-7	At1g06960	small nuclear ribonucleoprotein U2B, putative / spliceosomal protein, putative	O.I.	H.G.	S.X.	Please select
0.63	80.3	0.96	Contig361_s_at	Contig361	-	-	9e-8	At5g20830	SUS1 (SUCROSE SYNTHASE 1)	O.I.	H.G.	S.X.	Please select
0.63	80.3	0.96	Contig376_s_at	Contig376	-	-	5e+0	At1g28135	unknown protein	O.I.	H.G.	S.X.	Please select
0.56	74.3	0.97	Contig4131_at	Contig4131	-	-	2e-23	At1g77490	TAPX (THYLAKOIDAL ASCORBATE PEROXIDASE)	O.I.	H.G.	S.X.	Please select
0.52	68.3	0.96	Contig5733_at	Contig5733	-	-	2e+0	At5g47670	NF-YB6 (NUCLEAR FACTOR Y, SUBUNIT B6)	O.I.	H.G.	S.X.	Please select
0.46	61.0	0.96	Contig9459_at	Contig9459	-	-	1e-2	At5g54800	GPT1	O.I.	H.G.	S.X.	Please select
0.33	42.6	0.96	Contig22861_at	Contig22861	-	-	7e+0	At3g59880	unknown protein	O.I.	H.G.	S.X.	Please select
0.31	38.6	0.97	Contig7821_at	Contig7821	-	-	3e-3	At1g25420	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
6.3	98.1	GSM238413	Endosperm 4DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
5.4	97.5	GSM238412	Endosperm 4DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.4	96.6	GSM238429	Embryo 16DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.9	95.8	GSM282039	Malting_day4_Morex_rep2	GSE11200	Expression data from malting barley seeds
3.8	95.7	GSM238435	Embryo 24 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.2	94.3	GSM282021	Malting_day4_Legacy_rep 2	GSE11200	Expression data from malting barley seeds
3.2	94.3	GSM282037	Malting_day1_Morex_rep2	GSE11200	Expression data from malting barley seeds
3.2	94.3	GSM238437	Embryo 48 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.1	94.1	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.1	94.1	GSM238439	Embryo 72 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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