Co-expression analysis

Gene ID	Contig7567_at
Gene name
Homology with Arabidopsis	Similar to At2g02760: ATUBC2 (UBIQUITING-CONJUGATING ENZYME 2) (HF=5e-56)
Module size	32 genes
NF	0.51
%ile	71.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.82	93.1	0.75	Contig7567_at	Contig7567	-	-	5e-56	At2g02760	ATUBC2 (UBIQUITING-CONJUGATING ENZYME 2)	O.I.	H.G.	S.X.	Please select
0.69	85.5	0.82	HK06N02r_s_at	HK06N02r	-	-	3e-1	At2g42840	PDF1 (PROTODERMAL FACTOR 1)	O.I.	H.G.	S.X.	Please select
0.68	85.1	0.85	Contig5059_s_at	Contig5059	RNase S-like protein	-	7e+0	At5g35090	unknown protein	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.83	Contig4191_at	Contig4191	-	-	2e-6	At5g08180	ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	O.I.	H.G.	S.X.	Please select
0.66	81.5	0.80	Contig5928_at	Contig5928	-	-	1e-4	At5g19400	SMG7	O.I.	H.G.	S.X.	Please select
0.65	81.4	0.83	Contig4958_at	Contig4958	-	-	2e+0	At1g51560	FMN binding	O.I.	H.G.	S.X.	Please select
0.65	81.4	0.86	Contig409_s_at	Contig409	-	-	3e-4	At4g38680	GRP2 (GLYCINE RICH PROTEIN 2)	O.I.	H.G.	S.X.	Please select
0.64	80.9	0.83	Contig18844_at	Contig18844	-	-	2e+0	At1g68725	AGP19 (ARABINOGALACTAN-PROTEIN 19)	O.I.	H.G.	S.X.	Please select
0.61	78.7	0.82	Contig5058_x_at	Contig5058	RNase S-like protein	-	4e+0	At1g10990	unknown protein	O.I.	H.G.	S.X.	Please select
0.60	77.3	0.88	Contig11329_at	Contig11329	-	-	8e-3	At5g44570	unknown protein	O.I.	H.G.	S.X.	Please select
0.59	75.8	0.89	HA14H02r_at	HA14H02r	-	-	8e-1	At5g35610	paired amphipathic helix repeat-containing protein	O.I.	H.G.	S.X.	Please select
0.53	69.7	0.79	Contig7382_at	Contig7382	-	-	2e-13	At1g43670	fructose-1,6-bisphosphatase, putative / D-fructose-1,6-bisphosphate 1-phosphohydrolase, putative / FBPase, putative	O.I.	H.G.	S.X.	Please select
0.53	69.7	0.81	Contig14714_at	Contig14714	P-type ATPase	-	3e-68	At2g22950	calcium-transporting ATPase, plasma membrane-type, putative / Ca2+-ATPase, putative (ACA7)	O.I.	H.G.	S.X.	Please select
0.52	68.3	0.86	Contig8593_s_at	Contig8593	-	-	2e+0	At3g17090	protein phosphatase 2C family protein / PP2C family protein	O.I.	H.G.	S.X.	Please select
0.51	67.5	0.83	Contig7382_s_at	Contig7382	-	-	2e-13	At1g43670	fructose-1,6-bisphosphatase, putative / D-fructose-1,6-bisphosphate 1-phosphohydrolase, putative / FBPase, putative	O.I.	H.G.	S.X.	Please select
0.51	67.5	0.87	rbags1d02_at	rbags1d02	-	-	2e-2	At3g28007	nodulin MtN3 family protein	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.81	Contig4956_at	Contig4956	-	-	2e+0	At5g01840	OFP1 (OVATE FAMILY PROTEIN 1)	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.86	Contig6625_at	Contig6625	-	-	5e-30	At5g13030	unknown protein	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.89	Contig1147_s_at	Contig1147	-	-	6e-15	At1g07790	HTB1	O.I.	H.G.	S.X.	Please select
0.49	63.7	0.85	Contig20402_at	Contig20402	-	-	2e-1	At1g52720	unknown protein	O.I.	H.G.	S.X.	Please select
0.46	61.0	0.87	HT07C05r_s_at	HT07C05r	-	-	2e+0	At1g54140	TAFII21 (TATA BINDING PROTEIN ASSOCIATED FACTOR 21KDA SUBUNIT)	O.I.	H.G.	S.X.	Please select
0.46	61.0	0.85	Contig7429_s_at	Contig7429	-	-	5e-8	At2g18162	CPuORF1 (Conserved peptide upstream open reading frame 1)	O.I.	H.G.	S.X.	Please select
0.44	58.9	0.88	Contig12582_at	Contig12582	-	-	5e-17	At5g13010	EMB3011 (embryo defective 3011)	O.I.	H.G.	S.X.	Please select
0.44	58.9	0.85	Contig10958_at	Contig10958	-	-	2e-6	At1g57540	unknown protein	O.I.	H.G.	S.X.	Please select
0.42	55.2	0.85	Contig5870_at	Contig5870	-	-	3e-19	At1g19360	-	O.I.	H.G.	S.X.	Please select
0.39	50.5	0.87	HVSMEa0006I21r2_x_at	HVSMEa0006I21r2	-	-	3e-1	At1g14315	-	O.I.	H.G.	S.X.	Please select
0.39	50.5	0.83	Contig16406_at	Contig16406	-	-	3e-2	At3g15030	TCP4 (TCP family transcription factor 4)	O.I.	H.G.	S.X.	Please select
0.38	49.5	0.83	Contig19410_at	Contig19410	-	-	1e+1	At5g49420	MADS-box protein (AGL84)	O.I.	H.G.	S.X.	Please select
0.37	47.9	0.85	Contig14651_at	Contig14651	-	-	4e-1	At4g16830	nuclear RNA-binding protein (RGGA)	O.I.	H.G.	S.X.	Please select
0.36	47.1	0.81	Contig2843_s_at	Contig2843	-	-	4e-20	At3g06700	60S ribosomal protein L29 (RPL29A)	O.I.	H.G.	S.X.	Please select
0.27	32.1	0.89	Contig11177_at	Contig11177	-	-	5e-1	At5g53730	harpin-induced family protein / HIN1 family protein / harpin-responsive family protein	O.I.	H.G.	S.X.	Please select
0.24	27.2	0.83	Contig15158_s_at	Contig15158	-	-	1e-11	At5g65090	BST1 (BRISTLED 1)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
8.9	98.9	GSM261079	Albina e-16 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
6.8	98.3	GSM261067	Xantha s-46 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
6.4	98.1	GSM261042	before 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
6.3	98.1	GSM261064	Xantha s-46 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
5.7	97.7	GSM261043	before 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
5.2	97.4	GSM215731	gibberellin treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
5.1	97.3	GSM261044	before 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
4.8	97.0	GSM261076	Albina e-16 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.4	96.6	GSM261066	Xantha s-46 Hardened rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.9	95.8	GSM261074	Albina e-16 Control rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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