Co-expression analysis

Gene ID Contig7548_at
Gene name
Homology with ArabidopsisSimilar to At2g19830: SNF7.2 (HF=5e-35)
Module size 6 genes
NF 0.17
%ile 21.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5066.90.93Contig7548_atContig7548--5e-35At2g19830SNF7.2O.I.H.G.S.X.
0.3647.10.93Contig4056_atContig4056--7e-2At1g64185lactoylglutathione lyase family protein / glyoxalase I family proteinO.I.H.G.S.X.
0.3647.10.93Contig8041_atContig8041--9e-2At4g28480DNAJ heat shock family proteinO.I.H.G.S.X.
0.2021.10.93Contig12037_atContig12037--2e-4At5g22300NIT4 (NITRILASE 4)O.I.H.G.S.X.
0.1716.90.93HS04E01u_s_atHS04E01u--1e+0At1g17970zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.043.40.93Contig15357_atContig15357--3e-1At1g24440protein binding / zinc ion bindingO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
6.097.9GSM261073Albina f-17 Hardened rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
4.696.8GSM213443Barley seeds with P. aeruginosa PA5021 mutant for 12hrGSE8618P. aeruginosa virulent factor to barleyLink to GEO
4.696.8GSM261045after 3 days in mannitol medium rep1GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
4.296.3GSM213436Barley seeds with P. aeruginosa PAO1 for 12hrGSE8618P. aeruginosa virulent factor to barleyLink to GEO
4.196.2GSM238410Pericarp 8DAF; seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.795.5GSM1611487% SWC rep3GSE6990Barley drought stressLink to GEO
3.795.5GSM261079Albina e-16 Hardened rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
3.595.1GSM213441Barley seeds control in Hoagland solution for 12hrGSE8618P. aeruginosa virulent factor to barleyLink to GEO
3.595.1GSM261047after 3 days in mannitol medium rep3GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
3.494.8GSM261046after 3 days in mannitol medium rep2GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



Back to the CoP portal site

Back to the KAGIANA project homepage