Co-expression analysis

Gene ID	Contig7543_at
Gene name
Homology with Arabidopsis	Similar to At1g68820: membrane protein, putative (HF=3e-22)
Module size	7 genes
NF	0.14
%ile	16.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	84.7	0.91	Contig7543_at	Contig7543	-	-	3e-22	At1g68820	membrane protein, putative	O.I.	H.G.	S.X.	Please select
0.19	19.6	0.92	Contig26387_at	Contig26387	-	-	5e-2	At4g33840	glycosyl hydrolase family 10 protein	O.I.	H.G.	S.X.	Please select
0.17	16.9	0.92	Contig22438_at	Contig22438	-	-	4e+0	At3g27416	unknown protein	O.I.	H.G.	S.X.	Please select
0.14	12.9	0.91	Contig8707_s_at	Contig8707	-	-	6e-4	At4g32400	SHS1 (SODIUM HYPERSENSITIVE 1)	O.I.	H.G.	S.X.	Please select
0.14	12.9	0.91	Contig21263_at	Contig21263	-	-	5e+0	At4g15710	unknown protein	O.I.	H.G.	S.X.	Please select
0.11	9.4	0.91	Contig6326_at	Contig6326	-	-	6e-7	At5g45130	RHA1 (RAB HOMOLOG 1)	O.I.	H.G.	S.X.	Please select
0.06	4.8	0.91	Contig24323_at	Contig24323	-	-	1e+0	At2g46505	SDH4	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
13.8	99.5	GSM311205	28-4_with_aphids_2	GSE12584	Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
9.8	99.1	GSM311254	hsp5_with_aphids_2	GSE12584	Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
9.2	99.0	GSM311261	kara_with_aphids_3	GSE12584	Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
7.5	98.6	GSM311260	kara_with_aphids_2	GSE12584	Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
6.7	98.3	GSM311255	hsp5_with_aphids_3	GSE12584	Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
5.8	97.8	GSM311204	28-4_with_aphids_1	GSE12584	Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
4.9	97.1	GSM215732	gibberellin plus Yariv-reagent treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
4.7	96.9	GSM261069	Albina f-17 Control rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.7	96.9	GSM261070	Albina f-17 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.3	96.4	GSM261068	Albina f-17 Control rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1

Inter-species module comparison

A co-expression module including the maize gene, Zm.6521.1.A1_at, orthologous to the query gene, Contig7543_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	85.8	Zm.6521.1.A1_at	At1g68820	protein binding protein	-	7e-5	At1g68820	membrane protein, putative	O.I.	H.G.	S.X.	Please select
0.67	85.8	Zm.832.1.S1_at	At1g68820	-	-	1e+0	At1g54140	TAFII21 (TATA BINDING PROTEIN ASSOCIATED FACTOR 21KDA SUBUNIT)	O.I.	H.G.	S.X.	Please select
0.60	77.8	Zm.6522.2.A1_a_at	At1g68820	mpv17 / PMP22 family protein	-	2e-4	At1g52870	peroxisomal membrane protein-related	O.I.	H.G.	S.X.	Please select
0.43	52.8	Zm.12365.1.S1_at	At1g68820	hypothetical protein LOC100193020	-	6e-1	At1g69680	-	O.I.	H.G.	S.X.	Please select
0.36	41.3	Zm.16508.3.A1_x_at	At1g68820	ribosomal protein L39	-	4e-9	At3g02190	60S ribosomal protein L39 (RPL39B)	O.I.	H.G.	S.X.	Please select
0.32	33.4	Zm.4339.1.A1_at	At1g68820	-	-	1e+0	At1g47410	unknown protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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