Co-expression analysis

Gene ID Contig7543_at
Gene name
Homology with ArabidopsisSimilar to At1g68820: membrane protein, putative (HF=3e-22)
Module size 7 genes
NF 0.14
%ile 16.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6784.70.91Contig7543_atContig7543--3e-22At1g68820membrane protein, putativeO.I.H.G.S.X.
0.1919.60.92Contig26387_atContig26387--5e-2At4g33840glycosyl hydrolase family 10 proteinO.I.H.G.S.X.
0.1716.90.92Contig22438_atContig22438--4e+0At3g27416unknown proteinO.I.H.G.S.X.
0.1412.90.91Contig8707_s_atContig8707--6e-4At4g32400SHS1 (SODIUM HYPERSENSITIVE 1)O.I.H.G.S.X.
0.1412.90.91Contig21263_atContig21263--5e+0At4g15710unknown proteinO.I.H.G.S.X.
0.119.40.91Contig6326_atContig6326--6e-7At5g45130RHA1 (RAB HOMOLOG 1)O.I.H.G.S.X.
0.064.80.91Contig24323_atContig24323--1e+0At2g46505SDH4O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
13.899.5GSM31120528-4_with_aphids_2GSE12584Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines Link to GEO
9.899.1GSM311254hsp5_with_aphids_2GSE12584Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines Link to GEO
9.299.0GSM311261kara_with_aphids_3GSE12584Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines Link to GEO
7.598.6GSM311260kara_with_aphids_2GSE12584Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines Link to GEO
6.798.3GSM311255hsp5_with_aphids_3GSE12584Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines Link to GEO
5.897.8GSM31120428-4_with_aphids_1GSE12584Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines Link to GEO
4.997.1GSM215732gibberellin plus Yariv-reagent treatment rep2GSE8712The effects of Yariv-reagent on barley aleurone GA signalingLink to GEO
4.796.9GSM261069Albina f-17 Control rep2GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
4.796.9GSM261070Albina f-17 Control rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
4.396.4GSM261068Albina f-17 Control rep1GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.207994.1.S1_at, orthologous to the query gene, Contig7543_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.7192.6PtpAffx.207994.1.S1_atAt1g68820hypothetical protein-5e-48At1g68820membrane protein, putativeO.I.H.G.S.X.
0.7594.1PtpAffx.208295.1.S1_atAt1g68820hypothetical protein-3e+0At4g14723-O.I.H.G.S.X.
0.5984.9PtpAffx.208471.1.S1_atAt1g68820hypothetical protein-8e-22At3g06850BCE2O.I.H.G.S.X.
0.5380.5PtpAffx.22915.1.A1_atAt1g68820hypothetical protein-2e-15At2g29660zinc finger (C2H2 type) family proteinO.I.H.G.S.X.
0.5078.6PtpAffx.5537.1.A1_atAt1g68820--2e+0At5g07600oleosin / glycine-rich proteinO.I.H.G.S.X.
0.4369.7PtpAffx.14948.1.S1_atAt1g68820hypothetical protein-8e-9At4g35790ATPLDDELTAO.I.H.G.S.X.
0.4067.0PtpAffx.213504.1.S1_atAt1g68820hypothetical protein-1e-22At4g30080ARF16 (AUXIN RESPONSE FACTOR 16)O.I.H.G.S.X.
0.3964.6PtpAffx.212901.1.S1_atAt1g68820hypothetical protein-7e-9At5g23660MTN3 (Arabidopsis homolog of Medicago truncatula MTN3)O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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