CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Contig7543_at

Gene name
Homology with Arabidopsis Similar to At1g68820: membrane protein, putative (HF=3e-22)

Module size 7 genes

NF 0.14

%ile 16.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.67 84.7 0.91 Contig7543_at Contig7543 - - 3e-22 At1g68820 membrane protein, putative O.I. H.G. S.X.
0.19 19.6 0.92 Contig26387_at Contig26387 - - 5e-2 At4g33840 glycosyl hydrolase family 10 protein O.I. H.G. S.X.
0.17 16.9 0.92 Contig22438_at Contig22438 - - 4e+0 At3g27416 unknown protein O.I. H.G. S.X.
0.14 12.9 0.91 Contig8707_s_at Contig8707 - - 6e-4 At4g32400 SHS1 (SODIUM HYPERSENSITIVE 1) O.I. H.G. S.X.
0.14 12.9 0.91 Contig21263_at Contig21263 - - 5e+0 At4g15710 unknown protein O.I. H.G. S.X.
0.11 9.4 0.91 Contig6326_at Contig6326 - - 6e-7 At5g45130 RHA1 (RAB HOMOLOG 1) O.I. H.G. S.X.
0.06 4.8 0.91 Contig24323_at Contig24323 - - 1e+0 At2g46505 SDH4 O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
13.8 99.5 GSM311205 28-4_with_aphids_2 GSE12584 Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
9.8 99.1 GSM311254 hsp5_with_aphids_2 GSE12584 Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
9.2 99.0 GSM311261 kara_with_aphids_3 GSE12584 Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
7.5 98.6 GSM311260 kara_with_aphids_2 GSE12584 Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
6.7 98.3 GSM311255 hsp5_with_aphids_3 GSE12584 Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
5.8 97.8 GSM311204 28-4_with_aphids_1 GSE12584 Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
4.9 97.1 GSM215732 gibberellin plus Yariv-reagent treatment rep2 GSE8712 The effects of Yariv-reagent on barley aleurone GA signaling
4.7 96.9 GSM261069 Albina f-17 Control rep2 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.7 96.9 GSM261070 Albina f-17 Control rep3 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.3 96.4 GSM261068 Albina f-17 Control rep1 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1

Inter-species module comparison

A co-expression module including the rice gene, Os03g0706900, orthologous to the query gene, Contig7543_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.70 88.4 Os03g0706900 At1g68820 - Zn-finger, RING domain containing protein 2e-14 At1g73950 zinc finger (C3HC4-type RING finger) family protein O.I. H.G. S.X.
0.58 77.0 Os06g0714200 At1g68820 - Calcium/calmodulin-dependent protein kinasehomolog|CaM kinase homolog|MCK1 protein 8e-19 At2g46700 calcium-dependent protein kinase, putative / CDPK, putative O.I. H.G. S.X.
0.56 76.3 Os04g0525900 At1g68820 - Major facilitator superfamily protein 1e-18 At5g64500 membrane protein-related O.I. H.G. S.X.
0.55 73.7 Os04g0517400 At1g68820 - Conserved hypothetical protein 5e-15 At5g18480 PGSIP6 (PLANT GLYCOGENIN-LIKE STARCH INITIATION PROTEIN 6) O.I. H.G. S.X.
0.55 73.7 Os06g0188000 At1g68820 - Cyclic nucleotide-gated channel C (Fragment) 1e-11 At4g30360 ATCNGC17 O.I. H.G. S.X.
0.51 68.7 Os02g0822400 At1g68820 - No apical meristem (NAM) protein domain containingprotein 5e-3 At5g09330 anac082 (Arabidopsis NAC domain containing protein 82) O.I. H.G. S.X.
0.49 64.4 Os02g0581300 At1g68820 - ASC1 (Alternaria stem canker resistance protein) 5e-8 At3g25540 LAG1 O.I. H.G. S.X.
0.48 63.7 Os09g0281700 At1g68820 - Ras-related protein RGP1 (GTP-binding regulatoryprotein RGP1) 1e-17 At5g47960 ATRABA4C O.I. H.G. S.X.
0.44 58.1 Os01g0780500 At1g68820 - SCAMP family protein 1e-14 At2g20840 secretory carrier membrane protein (SCAMP) family protein O.I. H.G. S.X.
0.41 52.4 Os06g0116100 At1g68820 - Serine/threonine-protein kinase MAK (EC 2.7.1.37)(Male germ cell- associated kinase) 9e-17 At5g45430 protein kinase, putative O.I. H.G. S.X.
0.35 41.7 Os08g0122000 At1g68820 - B' regulatory subunit of PP2A 6e-12 At3g26020 serine/threonine protein phosphatase 2A (PP2A) regulatory subunit B', putative O.I. H.G. S.X.
0.32 36.3 Os01g0141100 At1g68820 - ATPase of the AAA+ class 4e-52 At2g27600 SKD1 (SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1) O.I. H.G. S.X.
0.31 34.5 Os02g0823000 At1g68820 - Protease-associated PA domain containing protein 2e-20 At1g63690 protease-associated (PA) domain-containing protein O.I. H.G. S.X.
0.31 34.5 Os06g0301000 At1g68820 - Zn-finger, RING domain containing protein 4e-3 At1g65040 protein binding / zinc ion binding O.I. H.G. S.X.
0.31 34.5 Os01g0338200 At1g68820 - Mov34/MPN/PAD-1 family protein 1e+0 At4g16144 - O.I. H.G. S.X.
0.29 31.1 Os01g0556400 At1g68820 - Heat shock protein DnaJ family protein 4e-3 At5g05750 DNAJ heat shock N-terminal domain-containing protein O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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