CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Contig7543_at

Gene name
Homology with Arabidopsis Similar to At1g68820: membrane protein, putative (HF=3e-22)

Module size 7 genes

NF 0.14

%ile 16.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.67 84.7 0.91 Contig7543_at Contig7543 - - 3e-22 At1g68820 membrane protein, putative O.I. H.G. S.X.
0.19 19.6 0.92 Contig26387_at Contig26387 - - 5e-2 At4g33840 glycosyl hydrolase family 10 protein O.I. H.G. S.X.
0.17 16.9 0.92 Contig22438_at Contig22438 - - 4e+0 At3g27416 unknown protein O.I. H.G. S.X.
0.14 12.9 0.91 Contig8707_s_at Contig8707 - - 6e-4 At4g32400 SHS1 (SODIUM HYPERSENSITIVE 1) O.I. H.G. S.X.
0.14 12.9 0.91 Contig21263_at Contig21263 - - 5e+0 At4g15710 unknown protein O.I. H.G. S.X.
0.11 9.4 0.91 Contig6326_at Contig6326 - - 6e-7 At5g45130 RHA1 (RAB HOMOLOG 1) O.I. H.G. S.X.
0.06 4.8 0.91 Contig24323_at Contig24323 - - 1e+0 At2g46505 SDH4 O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
13.8 99.5 GSM311205 28-4_with_aphids_2 GSE12584 Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
9.8 99.1 GSM311254 hsp5_with_aphids_2 GSE12584 Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
9.2 99.0 GSM311261 kara_with_aphids_3 GSE12584 Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
7.5 98.6 GSM311260 kara_with_aphids_2 GSE12584 Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
6.7 98.3 GSM311255 hsp5_with_aphids_3 GSE12584 Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
5.8 97.8 GSM311204 28-4_with_aphids_1 GSE12584 Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
4.9 97.1 GSM215732 gibberellin plus Yariv-reagent treatment rep2 GSE8712 The effects of Yariv-reagent on barley aleurone GA signaling
4.7 96.9 GSM261069 Albina f-17 Control rep2 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.7 96.9 GSM261070 Albina f-17 Control rep3 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.3 96.4 GSM261068 Albina f-17 Control rep1 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1

Inter-species module comparison

A co-expression module including the soybean gene, GmaAffx.4382.3.S1_at, orthologous to the query gene, Contig7543_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.67 86.1 GmaAffx.4382.3.S1_at At1g68820 - - 9e-18 At1g18470 zinc finger (C3HC4-type RING finger) family protein O.I. H.G. S.X.
0.73 88.9 GmaAffx.67700.1.S1_at At1g68820 - - 9e-1 At5g13620 unknown protein O.I. H.G. S.X.
0.67 86.1 GmaAffx.26272.1.S1_at At1g68820 - - 6e-36 At1g43190 polypyrimidine tract-binding protein, putative / heterogeneous nuclear ribonucleoprotein, putative O.I. H.G. S.X.
0.61 81.8 Gma.15087.2.S1_at At1g68820 - - 1e-94 At4g28860 ckl4 (Casein Kinase I-like 4) O.I. H.G. S.X.
0.60 80.7 GmaAffx.83672.1.S1_at At1g68820 - - 2e-51 At2g26000 zinc finger (C3HC4-type RING finger) family protein O.I. H.G. S.X.
0.44 63.3 GmaAffx.90745.1.S1_s_at At1g68820 - - 4e+0 At5g42235 Expressed protein O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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