Co-expression analysis

Gene ID	Contig7454_at
Gene name
Homology with Arabidopsis	Similar to At1g05850: POM1 (POM-POM1) (HF=1e-8)
Module size	7 genes
NF	0.32
%ile	42.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.63	80.3	0.94	Contig7454_at	Contig7454	-	-	1e-8	At1g05850	POM1 (POM-POM1)	O.I.	H.G.	S.X.	Please select
0.83	94.0	0.95	Contig17478_at	Contig17478	-	-	2e+0	At2g17695	unknown protein	O.I.	H.G.	S.X.	Please select
0.37	47.9	0.95	Contig13169_at	Contig13169	-	-	2e-24	At1g76860	small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative	O.I.	H.G.	S.X.	Please select
0.21	22.6	0.95	Contig2443_at	Contig2443	-	-	5e-3	At5g05230	ubiquitin-protein ligase	O.I.	H.G.	S.X.	Please select
0.19	19.6	0.94	Contig832_s_at	Contig832	-	-	9e-6	At5g66570	PSBO1 (PS II OXYGEN-EVOLVING COMPLEX 1)	O.I.	H.G.	S.X.	Please select
0.18	18.2	0.95	Contig10896_at	Contig10896	-	-	5e-41	At3g03120	ATARFB1C (ADP-ribosylation factor B1C)	O.I.	H.G.	S.X.	Please select
0.16	15.3	0.95	Contig7306_at	Contig7306	-	-	1e+0	At3g17820	ATGSKB6	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.0	97.2	GSM372981	genotype: 11542 - pathogen isolates: 5874 - time: 16 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
4.3	96.4	GSM372990	genotype: 11542 - pathogen isolates: 5874 - time: 32 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.7	95.5	GSM213443	Barley seeds with P. aeruginosa PA5021 mutant for 12hr	GSE8618	P. aeruginosa virulent factor to barley
3.6	95.3	GSM372959	genotype: Mla6 - pathogen isolates: K1 - time: 8 - rep1	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.5	95.1	GSM261070	Albina f-17 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.5	95.1	GSM372965	genotype: Mla6 - pathogen isolates: K1 - time: 20 - rep1	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.4	94.8	GSM372971	genotype: Mla6 - pathogen isolates: K1 - time: 32 - rep1	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.4	94.8	GSM372941	genotype: Mla6 - pathogen isolates: 5874 - time: 8 - rep1	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.4	94.8	GSM372987	genotype: 11542 - pathogen isolates: 5874 - time: 24 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.3	94.6	GSM372999	genotype: 11542 - pathogen isolates: K1 - time: 16 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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