Co-expression analysis

Gene ID	Contig7446_at
Gene name
Homology with Arabidopsis	Similar to At4g24240: WRKY7 (HF=3e-1)
Module size	9 genes
NF	0.41
%ile	57.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.44	58.9	0.96	Contig7446_at	Contig7446	-	-	3e-1	At4g24240	WRKY7	O.I.	H.G.	S.X.	Please select
0.56	74.3	0.97	Contig16664_at	Contig16664	-	-	3e-8	At1g73180	eukaryotic translation initiation factor-related	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.96	Contig9392_at	Contig9392	-	-	5e+0	At5g62780	DNAJ heat shock N-terminal domain-containing protein	O.I.	H.G.	S.X.	Please select
0.40	53.1	0.97	Contig15463_at	Contig15463	-	-	5e+0	At5g11930	glutaredoxin family protein	O.I.	H.G.	S.X.	Please select
0.38	49.5	0.96	HX01C23w_s_at	HX01C23w	-	-	5e+0	At5g17165	unknown protein	O.I.	H.G.	S.X.	Please select
0.38	49.5	0.97	Contig26395_at	Contig26395	-	-	5e+0	At5g07460	PMSR2 (PEPTIDEMETHIONINE SULFOXIDE REDUCTASE 2)	O.I.	H.G.	S.X.	Please select
0.34	43.6	0.96	Contig15852_at	Contig15852	-	-	1e-33	At1g29940	NRPA2	O.I.	H.G.	S.X.	Please select
0.33	42.6	0.96	HY03E10u_s_at	HY03E10u	-	-	1e+1	At5g63060	transporter	O.I.	H.G.	S.X.	Please select
0.30	37.0	0.97	Contig11731_at	Contig11731	-	-	2e-10	At3g02450	cell division protein ftsH, putative	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
6.4	98.1	GSM238435	Embryo 24 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
6.0	97.9	GSM213441	Barley seeds control in Hoagland solution for 12hr	GSE8618	P. aeruginosa virulent factor to barley
5.8	97.8	GSM261047	after 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
4.8	97.0	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
4.7	96.9	GSM238434	Embryo 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.2	96.3	GSM261046	after 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
4.2	96.3	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.9	95.8	GSM398276	Moroc9-75_1d_rep1	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
3.5	95.1	GSM213436	Barley seeds with P. aeruginosa PAO1 for 12hr	GSE8618	P. aeruginosa virulent factor to barley
3.2	94.3	GSM238436	Embryo 48 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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