Co-expression analysis

Gene ID	Contig7435_at
Gene name
Homology with Arabidopsis	Similar to At5g06340: ATNUDX27 (ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 27) (HF=3e-2)
Module size	6 genes
NF	0.10
%ile	12.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.77	90.8	0.89	Contig7435_at	Contig7435	-	-	3e-2	At5g06340	ATNUDX27 (ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 27)	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.92	Contig11040_at	Contig11040	-	-	4e-8	At2g01180	ATPAP1 (PHOSPHATIDIC ACID PHOSPHATASE 1)	O.I.	H.G.	S.X.	Please select
0.25	28.9	0.91	Contig4195_at	Contig4195	-	-	8e-1	At3g62140	unknown protein	O.I.	H.G.	S.X.	Please select
0.08	6.5	0.90	HA03B19u_s_at	HA03B19u	-	-	1e-3	At3g02700	NC domain-containing protein	O.I.	H.G.	S.X.	Please select
0.08	6.5	0.88	Contig19254_at	Contig19254	-	-	1e-1	At1g69180	CRC (CRABS CLAW)	O.I.	H.G.	S.X.	Please select
0.05	4.1	0.88	Contig10126_at	Contig10126	-	-	9e-2	At4g30067	LCR63 (Low-molecular-weight cysteine-rich 63)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
9.2	99.0	GSM238414	Endosperm 8DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
8.1	98.7	GSM238412	Endosperm 4DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
6.0	97.9	GSM398263	HS41-1_0d_rep3	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
4.4	96.6	GSM261073	Albina f-17 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.4	96.6	GSM398281	Moroc9-75_5d_rep1	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
4.2	96.3	GSM261067	Xantha s-46 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.9	95.8	GSM398282	Moroc9-75_5d_rep2	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
3.8	95.7	GSM261079	Albina e-16 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.5	95.1	GSM161148	7% SWC rep3	GSE6990	Barley drought stress
3.5	95.1	GSM261025	ABA-Early-rep2	GSE10328	ABA experiment

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage